Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03227 ATGACCGAGTCAATGCACGCCGTGGAACCGTCGCCGGAGGCGGCGGTGCTGCCGGCCTCCGATCCCTTGTTCGACGAGTTCTCCACCGAGTTTGGTTCCCTCCCCCTCATGTCCATGGACTCGCTCTTCAACTCCGACACGCTTCCCTTCACCTCAGATCTCGAATACGGCATGGACTTTGATGACAACAATGGAGAGTTCGAAATCACCTTCGACGATCTTGACGAAATCTGCATTCCCTCCGATGTCGAAGATTTCCTTCTCCCTGACGCATGTAACCCCAATAACACCTCCGTTTTGCCGCCGATTGACGAGTCTTCCGCGAAGAATTCCGATTCTCCTCGTTCGGACACGTCTGTGGTTTCTGGAGATCGGAGCTCCGGCGTTTCAAAGTTTTTCAATTCGCAAGCGTTGGATTCTGTTTCTGAGGGTAATTCGTGCAAAGAGGGTTCGCATGACGCGGCTGATGTTAGGGTTTCGAATATTTCCTCGCCGGAGTCTGAATTTTGCGACCGGGAGGAGTCTTCTGGTGGACCGGTTTCGTCTCAGGGATCAGGGAACGGTGGATCGGGTGTATATGAGGCTGTGAACTCGCCCTCGCCTGATTCTGGATCTTTGGAGAGGGACATAACATCGTCTCATGGGCATGCTGTTATGGACAAGGGTGTGAAATTGGAGGAAATTTCTGGGTGTGATCTGAAGAGGAAGAAAGTGAGTTGTGAAGGAAGTGCTATCAAGCATAGAAGGTTCTCTTCCTCTTCGGTGGAGACTAAGACAGAGAAACAGACTCCATCTGATGTGAATGCAATTGATGATGATGATGAGAAAAGGAAGGCAAGGCTGATGAGGAATAGGGAAAGTGCACAGCTTTCTAGGCAGAGGAAGAAGCATTACGTGGAAGAGCTCGAGGAGAAAGTGAGATCAATGAATTCCATCATTGCTGATCTGAGTAGCAAGATTTCATACATGGTGGCTGAGAATGCTACACTTAGACAGCAAGTGGGTGCTGGTGTGATGTGTGCTCCTCCACCACCTGCTCCTGGGATTTACCCTCATCCTCCAATGGCACCCATGGCTTATCCTTGGATGCCTTGTGCTCCCTATGTTGTCAAGCCTCAGGGATCTCAGGTTCCTTTGGTACCCATTCCTAGGTTGAAGCCTCAGCAACCCACTTCAGCACCCAGAGGTAAAAAGTCGGAGAGTAAGAAGAGTGAGGGGAAAACTAAGAAGGTTGCTAGTATTAGTTTCTTGGGTTTGTTTTTCTTTATCATGCTTTTTGGTGGGCTTGTTCCGCTTGTGGATTTTAAGTTTGGCGGTTTAGTGGACAATGTTCCTGATACTGGTATGTCTAGGTATGTTAGTGATAGGGTATATGGTCAAGGTGGGGGTAAGGTTTGGTCTGTGAACGGTCCTAGGAATGGGTCTGAAAGAGATGAAGAAGTAGGGTTTTCTAATGATAGGTTTAGTGTTAAAGACAAAATGAATTATGAGAGAGGCCGGCATTTAGGAGAAGAAAGGGGTGAACGGCAGGGCCCTAATGATTTTGGTCGCCAGGGAAATGCCAGCGAGCCTCTTGTTGCTTCTTTGTATGTTCCTAGGAATGATAAGATGGTGAAGATTGATGGAAACTTAATTATCCATTCCATAATGGCTAGTGAAAAAGCCATGGCATCTCAAACTGCCGATGCAAAGGAGAAGAGAGAAACAGGTTTGGCCATTCCTAAGGATTGGGATTCTGCATTGGCTATACCTGAAGTTGGAAGACATCCACACGTGTATAGGGTTCCTGCTGAACAGAGGAAGGCTCTTGCCTCTGGTTCAACCAAAGCTTTGAAGGACCATATGAAGTCCTCTGCAACTGATGGTAAAATGCAACAGTGGTTCCGTGAAGGTCTTGCAGGGCCAATGTTAAGTTCTGGCATGTGCACTGAAGTTTTCCAGTTTGATGTTTCTCCAAGTCCTGGAGCTATAGTTCCTGCAACATCAGTATCCAATGTGTCTACCGAAAAGCGTCAGAATGCTACCTCGGTGAAAAAGACCAGGAATAGAAGAACCCTTAATGGGCTTCCAGATTCTCTTACTGGATCGAGTCTGAACATAACTGAAGAGCATGTAAAAAACTTGCAGAAAAACCACCTCCATGGTAATGAATCTTCCATGGTGGTTTCAGTCCTTGTTGATCCTAAAGAGGCTGGTGATGGTGATGTGGATGGCATGATGAGACCGAAGTCACTCTCTCGGATCTTCGTGGTTGTGCTAATTGATAGTGTCAAGTATGTCACTTACTCTTGCGGTCTGCCTCGTGCTTCTCCCCATTTGGTGACTGCTTATGTATGA 2337 0.4745 MTESMHAVEPSPEAAVLPASDPLFDEFSTEFGSLPLMSMDSLFNSDTLPFTSDLEYGMDFDDNNGEFEITFDDLDEICIPSDVEDFLLPDACNPNNTSVLPPIDESSAKNSDSPRSDTSVVSGDRSSGVSKFFNSQALDSVSEGNSCKEGSHDAADVRVSNISSPESEFCDREESSGGPVSSQGSGNGGSGVYEAVNSPSPDSGSLERDITSSHGHAVMDKGVKLEEISGCDLKRKKVSCEGSAIKHRRFSSSSVETKTEKQTPSDVNAIDDDDEKRKARLMRNRESAQLSRQRKKHYVEELEEKVRSMNSIIADLSSKISYMVAENATLRQQVGAGVMCAPPPPAPGIYPHPPMAPMAYPWMPCAPYVVKPQGSQVPLVPIPRLKPQQPTSAPRGKKSESKKSEGKTKKVASISFLGLFFFIMLFGGLVPLVDFKFGGLVDNVPDTGMSRYVSDRVYGQGGGKVWSVNGPRNGSERDEEVGFSNDRFSVKDKMNYERGRHLGEERGERQGPNDFGRQGNASEPLVASLYVPRNDKMVKIDGNLIIHSIMASEKAMASQTADAKEKRETGLAIPKDWDSALAIPEVGRHPHVYRVPAEQRKALASGSTKALKDHMKSSATDGKMQQWFREGLAGPMLSSGMCTEVFQFDVSPSPGAIVPATSVSNVSTEKRQNATSVKKTRNRRTLNGLPDSLTGSSLNITEEHVKNLQKNHLHGNESSMVVSVLVDPKEAGDGDVDGMMRPKSLSRIFVVVLIDSVKYVTYSCGLPRASPHLVTAYV 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03227 778 PANTHER BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED 58 773 - -
Vimu6g03227 778 MobiDBLite consensus disorder prediction 379 407 - -
Vimu6g03227 778 Coils Coil 299 319 - -
Vimu6g03227 778 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 274 334 IPR004827 GO:0003700|GO:0006355
Vimu6g03227 778 SMART brlzneu 272 336 IPR004827 GO:0003700|GO:0006355
Vimu6g03227 778 CDD bZIP_HY5-like 277 328 - -
Vimu6g03227 778 MobiDBLite consensus disorder prediction 143 222 - -
Vimu6g03227 778 Pfam bZIP transcription factor 276 334 IPR004827 GO:0003700|GO:0006355
Vimu6g03227 778 SUPERFAMILY Leucine zipper domain 276 334 IPR046347 GO:0003700|GO:0006355
Vimu6g03227 778 Gene3D - 274 336 - -
Vimu6g03227 778 MobiDBLite consensus disorder prediction 501 520 - -
Vimu6g03227 778 MobiDBLite consensus disorder prediction 97 126 - -
Vimu6g03227 778 FunFam bZIP transcription factor 49 275 337 - -
Vimu6g03227 778 MobiDBLite consensus disorder prediction 176 210 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03227 29 776 bZIP Transcription Factor Family AT2G40950 47.911 2.03e-172 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu6g03227 bZIP_1 8.9e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03227 K25783 - gmx:100101871 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03227 6 28841945 28844912 Vimu6g03227 6 28841945 28844912 ECH