Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03223 ATGAGGGAAGACGATTCCAATTGGTTTTCTCGATGGGAAGACGAGCTCCCTCCGCCAGAGGAACTCATGCCCCTATCCCAAACCCTAATCACGCCCGATCTAGCCATGGCTTTCGATATCAGAAACCCCCACACCACCACCAACCCCAACACCGCGCAACACCATCAACACCAACAACACCCACCGCAACAACAACAACAACAGCAGCAACAACAACAACCTTCCAACCCTTCCTCGCTTCCCAACCCCCAGCAACCCACCTCCAACGACTTTGCCGACTCCGGCGAGCTCGGCTCCGGCACCGCCGGCGAGGAGCCCGCTCGAACCCTCAAGCGCCCCCGCCTTGTGTGGACCCCGCAGCTCCATAAGCGCTTCGTCGACGCCGTCGCGCACCTCGGCATAAAAAACGCCGTTCCCAAGACCATAATGCAGCTCATGAGCGTCGATGGTTTGACCCGAGAAAACGTGGCCAGTCACTTGCAGAAGTACCGTCTCTATCTCAAACGCATGCAGGGGATTTCCGCCGCCGGACCCGGTGGTCCCGGAGGCGGCGCCTCCGGCGCGGTCGCGGACCCCGCCACTGACCACCTCTTCGCCAGCTCCCCGGTGCCGGCGCATTTCCTGCACCCCGCGACGAGGCCAAATTCGGATCATTTCCTTCCGTTTGTGCCGGTGCCGGCGCTCCACCACCACCAGCAGCAACAGCAGCAGCTGGCCGCGGCGGCCCAGTACCATAGACAGGTGAGCCATTTCGGGTCGCCGCCGAATGGGCACTTCGAGAACCCGTTCATTTCTAGGCCGAATCTTCAGAGGATGGGTGGGGGTGGAGGTGGTCCTGTGCATAACCACCACCCTGTGAGTGGCTATGTGGAGGATATGGAATCTGCTAATGCTGCCTCAGGAGGTCTTAATTGGTATTTTTGTGTTAGGGTTATTGTTAATGAGTTTGGTGTTGCTAATTGGGGATATTGGAGTCTAGAGTTTAAGTCTGCAGATTCAAAAGCTCCAGCAGTCATGATACTTCTAGTGGTAATTCTGGATGACAATCAGTGGTTTCCTGGTGTTGAGGCTTCCTCTGATTCTCTGGGAATTGGTCTCTGGCTGGATGAAATCCGGAGGATCACTGAATGGATGGATTTGTGTTGGTATTCATGGAAGGATTGA 1164 0.5644 MREDDSNWFSRWEDELPPPEELMPLSQTLITPDLAMAFDIRNPHTTTNPNTAQHHQHQQHPPQQQQQQQQQQQPSNPSSLPNPQQPTSNDFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGPGGPGGGASGAVADPATDHLFASSPVPAHFLHPATRPNSDHFLPFVPVPALHHHQQQQQQLAAAAQYHRQVSHFGSPPNGHFENPFISRPNLQRMGGGGGGPVHNHHPVSGYVEDMESANAASGGLNWYFCVRVIVNEFGVANWGYWSLEFKSADSKAPAVMILLVVILDDNQWFPGVEASSDSLGIGLWLDEIRRITEWMDLCWYSWKD 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03223 387 FunFam Two-component response regulator 108 171 - -
Vimu6g03223 387 MobiDBLite consensus disorder prediction 1 111 - -
Vimu6g03223 387 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 168 IPR017930 -
Vimu6g03223 387 Pfam Myb-like DNA-binding domain 116 164 IPR001005 -
Vimu6g03223 387 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 272 IPR044841 GO:0003700|GO:0006355
Vimu6g03223 387 SUPERFAMILY Homeodomain-like 109 169 IPR009057 -
Vimu6g03223 387 MobiDBLite consensus disorder prediction 1 18 - -
Vimu6g03223 387 NCBIfam myb-like DNA-binding domain, SHAQKYF class 113 165 IPR006447 GO:0003677
Vimu6g03223 387 Gene3D - 109 171 - -
Vimu6g03223 387 MobiDBLite consensus disorder prediction 41 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03223 Vimu-Chr6 28809928 28811412 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03223 1 301 G2-like Transcription Factor Family AT3G10760 57.018 2.03e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vimu6g03223 Myb_DNA-binding 3.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03223 - - gmx:100815363 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03223 6 28809928 28811412 Vimu6g03223 6 28809928 28811412 ECH