Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03222 ATGCCTTCGAGCTCGAATTCAAAGCAGAAAAGGAAGCAATTGAAAGCGCAGCTGCAAAACTCACCATTGTCGTCGAATGCCACCACCGTGCCTTCCAAAACGCAGCAACAACAAGCACAAGAGCATGCCTCTTTATGCGTAGAAGCTTCTAGAAAGTTCCCTTCTCTCATCGCTGAATCCGCGATCGTCGCTAAAATCATCCATGTCGACGACACCGTTCCCCTTTTCAAGGGCTTCAGAATTTGGCTCTCCGAACCGTCGATGCTCTCCTCCTCCCTCTCCCCGGCTAATGAGTGTGCCAAATGCCATGGACTGGAAATCGGGAAGGCGGTTGATGATGATGATGTGGGGAACTACTTTGTGCTTGCAACGGTGTTTCCTGCTAGTAAGGTTTCGAAGGATGGAGTACGCCTGTCTTCAAACCTTTATTATACTATGGGATGTCCTCCTATGGGCTCAAGTGTGTTTGTTTGTGCATTACAGAAACAACTCTTGCCTACTCCTGCCAGTGGGAGCAAACAACAGCATTATATGGAAAATAGTTGTCTACCTATTAATAATTGCAAGGAATTGTATCTTCAGTTGGTTCCTTCTAAAAGTGGGCTACCGTTGAAGTTTAATAATTTTCCCTCATTGGACGTGTCTAAGGTGAAATCTAATGTCCAATTTGAGAATGACACTGTTGCTTCTCCTGCAACACCTTCTTCTGTATCAAAGTTTTCTAATGCTAGTGGTTTGTCTTCTCCACAATTTGAGGATTCAGCATCTAGTGTGCCAAATCAGAAGAGTCAATCACTGATTTCATCTGATGTCAGCTTAGCATTAAGTGATGAAAGTTCTAAGCAGTCACTTGAGACATGGGCAACTTCATGGTTATATTCTCGATCTTTACTTCTAGGGAATCTTGTCAGTGTTCCAATGTTTTCAGAGTGTTTTTTCCAAGTGATAGGAGCTAAGAAGCAACCAGTTGCCAAATCTGGTCATTATCCATCAAATGGAAGCAGTGATTTATATCCTGAGGATTCTGATATAGCAGATAGTGTATATCAGGCTTTCACTGTTAATTATGAAACAAAGGTATTTCTATCTCTGCCATCAAATGCAGCATCTGAAGAGCCAATTCAAAGGGATATACCTTGTGTGAAACTAGAACACAAAGTTGCCAATGTTAGCTTACCAGATAAAATCTCTAAATTAGGTGGTCTATCCAAAGAATATACACTTCTAAAGGACATAATTTCTTCGTCAGTGAATGATGCTTTATCAAGCTTTGGTCTAAGAACTACAAGAGGTGTCCTTCTTCATGGTCCAACCGGTACAGGAAAGACTTCCCTGGCTCAATTATGTACTCATGATGTTGGAGTCAATTTTTTCCCAATAAATGGACCTGAAATTGTTACCCAATATTATGGGGAAAGTGAGCAAGCTTTGCATAAAGTTTTCGATTCCGCCATTGAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGAAGGAGGTGAAGAGCTATCTCAAAGATTGGTTGCAACTTTATTGAATATGATGGATGGAATTAGTAGAACTGATGGGTTACTTGTAATTGCTGCCACTAACCGCCCTGACCATATTGAGCCAGCTCTCAGACGACCTGGAAGATTTGACAAGGAAATTGAAATTGGTATTACCTATGCTAGTGTGCCATCCCCCAAACAACGTTCAGATATTTTGTTCACTCTTCTCAATGAAATGGATCATTGTCTCTCTGCGTTACAAATTGAACAGCTTGGTACAGTCACTCATGGTTTTGTGGGTGCTGATCTAGTTGCACTTTGCAATGAGGCAGCCTTGATTTGTCTACGGCATTATGCTAGCTTTAAGAAGACCTATGATTCTTGTTCTGATTATATAACCGGGAAACCTGTTATGATGAATGGTGCAACAAACTCAATAGATCATTTGGATGAGGCAACTTCATCTACTTCAGATATGTCTGCCGTCAGTTGTGTATTACCTTCTTGCATGGTAAGAAGGACTTGTGAAACTACGGATATAATTCCTGATAGTGTTAAAGAAGAGCAGCTTTTGAAAGTAAGCTTTGAAGATTTTCAGAAGGCCAGGATGAAAATAAGACCAAGTGCCATGAGAGAGGTAATCCTGGAGGTTCCAAAGGTTAATTGGGAAGATGTTGGCGGTCAAAAGGAGGTCAAAGCTCAATTGATGGAAGCAGTTGAATGGCCACAGAAACACCATGATGCATTCGACCGTATTGGAACTCGCCCTCCTACAGGTGTATTGATGTTTGGGCCTCCAGGTTGTAGTAAAACCCTCATGGCACGTGCAGTTGCTTCTGAGGCAGGGTTGAACTTTCTAGCAGTCAAGGGTCCTGAACTCTTCAGCAAATGGGTTGGTGAATCTGAGAAGGCCGTCAGATCATTATTTGCAAAAGCAAGGGCCAATGCCCCATCAATAGTATTTTTTGATGAAATAGACAGTCTTGCTGTAACTCGTGGGAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAGTTAGATGGTCTACATCAAAGAGTTAATGTCACTGTCATTGCTGCTACAAATAGGCCAGACAAGATTGACCCTGCCCTTTTAAGGCCAGGTACCCTCTCTCTTATGTTGTTCTCCAAGTGTTCTATGCCCATTCAGATGCATGATGGACGCTTTGACCGTCTGCTATATGTTGGACCTCCAACTGAGGTGGATAGGGAAGAGATATTTCGCATTCATCTACGTAAAATCCCATGCGGTTCTGATGTTAGCCTTAGAGAACTAGCTCTACTCACAGATGGTTGTACTGGGGCTGACATATATTTGATATGTCGTGAGGCAGCTGTTGCAGCAATTGAGGAGAGCCTTGATGCTTCAGTTATAACAATGAAGCATTTAAAGATGGCAATCAAACAGATCCAGCCATCAGATGTTCACTCCTACCAAAAGCTGTCAACAAAATTTCAAAGGGCCGTCCAGTGCAGTGATATAAAGGATGAATTCAATCCTATGCAGTGCGACATTAAATCTACCCACTTCAACATTTGGTAA 3099 0.4217 MPSSSNSKQKRKQLKAQLQNSPLSSNATTVPSKTQQQQAQEHASLCVEASRKFPSLIAESAIVAKIIHVDDTVPLFKGFRIWLSEPSMLSSSLSPANECAKCHGLEIGKAVDDDDVGNYFVLATVFPASKVSKDGVRLSSNLYYTMGCPPMGSSVFVCALQKQLLPTPASGSKQQHYMENSCLPINNCKELYLQLVPSKSGLPLKFNNFPSLDVSKVKSNVQFENDTVASPATPSSVSKFSNASGLSSPQFEDSASSVPNQKSQSLISSDVSLALSDESSKQSLETWATSWLYSRSLLLGNLVSVPMFSECFFQVIGAKKQPVAKSGHYPSNGSSDLYPEDSDIADSVYQAFTVNYETKVFLSLPSNAASEEPIQRDIPCVKLEHKVANVSLPDKISKLGGLSKEYTLLKDIISSSVNDALSSFGLRTTRGVLLHGPTGTGKTSLAQLCTHDVGVNFFPINGPEIVTQYYGESEQALHKVFDSAIEAAPAVVFIDELDAIAPARKEGGEELSQRLVATLLNMMDGISRTDGLLVIAATNRPDHIEPALRRPGRFDKEIEIGITYASVPSPKQRSDILFTLLNEMDHCLSALQIEQLGTVTHGFVGADLVALCNEAALICLRHYASFKKTYDSCSDYITGKPVMMNGATNSIDHLDEATSSTSDMSAVSCVLPSCMVRRTCETTDIIPDSVKEEQLLKVSFEDFQKARMKIRPSAMREVILEVPKVNWEDVGGQKEVKAQLMEAVEWPQKHHDAFDRIGTRPPTGVLMFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDSLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGTLSLMLFSKCSMPIQMHDGRFDRLLYVGPPTEVDREEIFRIHLRKIPCGSDVSLRELALLTDGCTGADIYLICREAAVAAIEESLDASVITMKHLKMAIKQIQPSDVHSYQKLSTKFQRAVQCSDIKDEFNPMQCDIKSTHFNIW 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03222 1032 MobiDBLite consensus disorder prediction 1 37 - -
Vimu6g03222 1032 Gene3D - 715 894 IPR027417 -
Vimu6g03222 1032 SMART AAA_5 761 898 IPR003593 GO:0016887
Vimu6g03222 1032 SMART AAA_5 428 565 IPR003593 GO:0016887
Vimu6g03222 1032 CDD RecA-like_CDC48_NLV2_r1-like 398 560 - -
Vimu6g03222 1032 Gene3D - 568 714 - -
Vimu6g03222 1032 FunFam calmodulin-interacting protein 111 isoform X1 722 895 - -
Vimu6g03222 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 626 IPR027417 -
Vimu6g03222 1032 FunFam Calmodulin-interacting protein 111 568 725 - -
Vimu6g03222 1032 Gene3D - 382 561 IPR027417 -
Vimu6g03222 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 723 996 IPR027417 -
Vimu6g03222 1032 ProSitePatterns AAA-protein family signature. 867 885 IPR003960 GO:0005524|GO:0016887
Vimu6g03222 1032 Gene3D - 917 1000 - -
Vimu6g03222 1032 FunFam spermatogenesis-associated protein 5-like protein 1 917 999 - -
Vimu6g03222 1032 CDD RecA-like_CDC48_r2-like 736 914 - -
Vimu6g03222 1032 PANTHER AAA-FAMILY ATPASE 200 1006 - -
Vimu6g03222 1032 Pfam ATPase family associated with various cellular activities (AAA) 432 561 IPR003959 GO:0005524|GO:0016887
Vimu6g03222 1032 Pfam ATPase family associated with various cellular activities (AAA) 765 889 IPR003959 GO:0005524|GO:0016887
Vimu6g03222 1032 Pfam AAA+ lid domain 592 622 IPR041569 -
Vimu6g03222 1032 Pfam AAA+ lid domain 938 983 IPR041569 -
Vimu6g03222 1032 FunFam Putative vesicular transport protein (CDC48) 383 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03222 Vimu-Chr6 28798785 28806705 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03222 7 1016 Calmodulin-binding Proteins AT3G56690 52.577 0.0 950
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03222 - - vum:124834498 1848.94