Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03221 ATGAGCGGTTTGGTTGTGATTTTCCTAGGTGAAGCAGTAATAGGGGGAGAAAAACAGCAGAAGAAGAACGGTGTAGCGGATGGAAAGAATCGCAAGGCGTTGGGTGATATTGGGAATTTGGCCAATGTAAGAGGAGTTGTTGAAGCCAAGCCTCATCGCCCCATCACTAGGAGTTTTGGTGCCCAACTACTTGCCAAAGCACAAGCCGCAGCAGTTGTCGAGAATAACAAGAGACAAGCCTGTGCTAATGTTGCTGGTCCTGCTCCTATCGCTGTGGCCAAAAGAGTTCCCAAGCCGGGACAGAAGAAAGTTACTGTAAAACCAAAGCCTGAGGAAGTCATTGACATTGAAGATAGTTCAGATAAGGATGTCCTGAAAGACAAGAAAAAGGAAGGAGATCGCAAGTCCAAGAAGAATTCACAAGCTTTTACATCAGTTCTCACGGCCAGAAGCAAGGCTGCATGTGGTATAACTAACAAACCAAAGGAGAATATTATAGACATCGATGCCAGTGATGTTGACAATGAACTTGCTGCTGTGGAGTACATTGACGACATTTACAAGTTCTATAAACTTGTTGAGCACGAAAGCCGCCCCCATGACTACATACACTCACAACCTGAGATAAATGAGAAGATGAGAGCTATTCTGGTTGATTGGCTGATTGATGTCCACAGCAAGTTTGAACTTTCACTCGAGACCCTTTACCTGACCATCAATATTATCGATCGATTCCTAGCAGTTAAGACTGTTCCAAGGAGGGAGCTGCAATTGGTAGGCATCAGTGCCATGCTGATGGCATCCAAGTATGAAGAAATCTGGCCACCAGAGGTCAATGATTTTGTCCACCTCTCAGATAGAGCTTACACTCATGAACAGATACTTGTTATGGAGAAAGTTATACTGGGAAAGTTGGAATGGACTTTGACTGTTCCCACACCTTTTGTTTTTCTGGTGCGTTTTATCAAGGCATCAGTCCCAGATCAGGAGTTGGAAAACATGACCCATTTTCTGTCTGAGTTGGGAATGATGAATTACGCGACCTTAATGTATTGCCCATCAATGCTTGCTGCCTCAGCAGTGTTCGCAGCTAGATGCACTCTGAATAAGACTCCCCTTTGGAATGACACGCTTAAGTTGCATACTGGCTACTCACAAGAACAACTTATGGATTGTGCTAAACTATTGGCGAGCTTGCACTCCTCTGCTGGAAATGAAAAGCTGAAGGTAGTGTACAGAAAGTATTCTGATCCTCAGAAGGGAGCTGTTGCTGTGCTCCCACCGGCTAAGTATCTTCTGCCTGAAGGTTCAGCCTCCCAATAA 1323 0.4482 MSGLVVIFLGEAVIGGEKQQKKNGVADGKNRKALGDIGNLANVRGVVEAKPHRPITRSFGAQLLAKAQAAAVVENNKRQACANVAGPAPIAVAKRVPKPGQKKVTVKPKPEEVIDIEDSSDKDVLKDKKKEGDRKSKKNSQAFTSVLTARSKAACGITNKPKENIIDIDASDVDNELAAVEYIDDIYKFYKLVEHESRPHDYIHSQPEINEKMRAILVDWLIDVHSKFELSLETLYLTINIIDRFLAVKTVPRRELQLVGISAMLMASKYEEIWPPEVNDFVHLSDRAYTHEQILVMEKVILGKLEWTLTVPTPFVFLVRFIKASVPDQELENMTHFLSELGMMNYATLMYCPSMLAASAVFAARCTLNKTPLWNDTLKLHTGYSQEQLMDCAKLLASLHSSAGNEKLKVVYRKYSDPQKGAVAVLPPAKYLLPEGSASQ 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03221 440 PIRSF Cyclin_A_B_D_E 10 440 IPR046965 GO:0016538|GO:0044772
Vimu6g03221 440 SMART Cyclin_C_2 312 429 IPR004367 -
Vimu6g03221 440 PANTHER CYCLINS 135 417 IPR039361 -
Vimu6g03221 440 Pfam Cyclin, N-terminal domain 185 309 IPR006671 -
Vimu6g03221 440 SUPERFAMILY Cyclin-like 311 431 IPR036915 -
Vimu6g03221 440 Gene3D - 199 310 - -
Vimu6g03221 440 SMART cyclin_7 219 303 IPR013763 -
Vimu6g03221 440 SMART cyclin_7 316 398 IPR013763 -
Vimu6g03221 440 CDD CYCLIN_AtCycB-like_rpt1 162 307 - -
Vimu6g03221 440 Gene3D - 185 424 - -
Vimu6g03221 440 ProSitePatterns Cyclins signature. 214 245 IPR006671 -
Vimu6g03221 440 CDD CYCLIN_AtCycB-like_rpt2 312 428 - -
Vimu6g03221 440 FunFam G2/mitotic-specific cyclin 198 305 - -
Vimu6g03221 440 FunFam G2/mitotic-specific cyclin-1 306 424 - -
Vimu6g03221 440 SUPERFAMILY Cyclin-like 174 309 IPR036915 -
Vimu6g03221 440 Pfam Cyclin, C-terminal domain 312 428 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03221 Vimu-Chr6 28788632 28791564 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03221 24 433 Core Cell Cycle Gene Families AT4G37490 55.213 6.62e-149 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03221 K21777 - gmx:547919 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03221 6 28788632 28791564 Vimu6g03221 6 28788632 28791564 ECH