Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03220 ATGGCATCAAGAACCACCGTTAAACAACAGGGCGCAGATGAAGCAGTAGTGAAAGGAGGGAAACAGCGGTGTGGAAGGAACCGCAAGGCGTTAGGTGATATTGGGAATTTGGCCAATGTAGGAGAAGTTGAAGTCAAACCTAATCGACCCATCACAAGGAGTTTTAGAGCTCTTCTACATGCCCAAGCACAAGCAGCCGCAGCTACTGATAAGAATAATAAGAAACAGGTTTCTGCCAATGTGGCTGGACTTCCACCTGTTTCTAATGCAGTTGCAGCGGCCAAAAGAGTGGTCCAAAAACGGGGTCAGAAAAAAGTCACTGTAAAACCAAAACCTGAGAAACCCATCGACAAGGAAGCTATCCCAGATAAGAAGATTCAGAAAAACAAGACAAGGGAAGGATATGACAACTCTAAGAAGAATTCACACGCTTTTACTTCAGTGCTCACGGCTCGAAGCAAGGCAGCAAGCGGCATAACAAACAAACCGAAGGAGCAGATTATTGACATTGATGCTGGTGATGTTGACAATGAGCTTGCTGCTGTGGAGTATATTGATCACCTTTACAGGTTCTATAAGCTTGTTGAGAATGAGAACCGCCCTCGTGACTACATAGAGTCACAACCTGAGATAAATGAGAGGTCGAGAGCTATACTAGTTAATTGGCTGATCGAAGTCAACACCAAATTTAACCTTTCACTTGAGACCCTTTACTTGACAATCAATATCATTGATCGGTTCCTATCAGTTAAGAGTATTCCAAGGAGTGGGGAACTGCAATTGGTTGGCATCAGTGCCATGCTGATGGCATCCAAGTATGAAGAAATCTGGGCGCCTGAGGTTGAAGGTCTTGTCTGCCTTACAACTTACACTCATGAACAGATACTGGTCATGGAGAAAACCATACTATATCAGCTGGAATGGACTTTGACTGTGCCAACACCTCTTGTTTTCCTGGTTCGTTTTATCAAGGCAACAATCCCAGATCAGGAGTTGGAAAACATGGCTCATTTTCTGTCTGAGTTGGGATTGGTGCACTATGCAACCATAATGTATTGCCCGTCAATGATTGCTGCCTCAGCAGTGTTCGCAGCTAGATGCACTCTGAATAAGACTCCCCTTTGGAATGAGACGCTTAAGTTGCACACTGGTTACTCACAAGAACAACTTATGGAATGTTCTAGATTATTGGTGAGTTTCCACTCCATGGTTGGGGATGAAGAAGAGCTGAAAGTAGTGCACAGAAAGTATTCTGATCCTCAGAAAGGAGCTGTTGCTATGCTCCCACCAGCTAAAAATCTTCTGCCTGTCTCTCAACAGAGTTAA 1326 0.4419 MASRTTVKQQGADEAVVKGGKQRCGRNRKALGDIGNLANVGEVEVKPNRPITRSFRALLHAQAQAAAATDKNNKKQVSANVAGLPPVSNAVAAAKRVVQKRGQKKVTVKPKPEKPIDKEAIPDKKIQKNKTREGYDNSKKNSHAFTSVLTARSKAASGITNKPKEQIIDIDAGDVDNELAAVEYIDHLYRFYKLVENENRPRDYIESQPEINERSRAILVNWLIEVNTKFNLSLETLYLTINIIDRFLSVKSIPRSGELQLVGISAMLMASKYEEIWAPEVEGLVCLTTYTHEQILVMEKTILYQLEWTLTVPTPLVFLVRFIKATIPDQELENMAHFLSELGLVHYATIMYCPSMIAASAVFAARCTLNKTPLWNETLKLHTGYSQEQLMECSRLLVSFHSMVGDEEELKVVHRKYSDPQKGAVAMLPPAKNLLPVSQQS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03220 441 MobiDBLite consensus disorder prediction 1 20 - -
Vimu6g03220 441 SMART Cyclin_C_2 313 431 IPR004367 -
Vimu6g03220 441 Pfam Cyclin, C-terminal domain 313 430 IPR004367 -
Vimu6g03220 441 FunFam G2/mitotic-specific cyclin-1 286 426 - -
Vimu6g03220 441 Pfam Cyclin, N-terminal domain 189 310 IPR006671 -
Vimu6g03220 441 SUPERFAMILY Cyclin-like 312 432 IPR036915 -
Vimu6g03220 441 SMART cyclin_7 221 304 IPR013763 -
Vimu6g03220 441 SMART cyclin_7 317 399 IPR013763 -
Vimu6g03220 441 PANTHER CYCLINS 137 419 IPR039361 -
Vimu6g03220 441 CDD CYCLIN_AtCycB-like_rpt2 313 430 - -
Vimu6g03220 441 ProSitePatterns Cyclins signature. 216 247 IPR006671 -
Vimu6g03220 441 Gene3D - 201 311 - -
Vimu6g03220 441 SUPERFAMILY Cyclin-like 176 310 IPR036915 -
Vimu6g03220 441 PIRSF Cyclin_A_B_D_E 1 441 IPR046965 GO:0016538|GO:0044772
Vimu6g03220 441 Gene3D - 189 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03220 Vimu-Chr6 28776802 28779128 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03220 1 435 Core Cell Cycle Gene Families AT4G37490 50.113 6.82e-131 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03220 K21777 - gmx:547919 598.201