Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03218 ATGAAGTCTTGGTCAGTGGACGAGTGGAGGGAGTACTTTGTGTCTGCGAATTCGGATATTTTTGAGATAATTGAAAACGCTATAATCGTGGCGGCTACGGATTGTCCCAAGGAGTTTAAAGTGAAGAGGGATGCGATTGCAGAGAGGCTGTTCTGTTCCAGGTTGACTCGCTGTGCGGGTTGTGACCGTGTGGAGTTGGCTGCGAGGGGAGTTGGTAAAGAGAGTGATGATGAAGGCTGCAAGAATGGGGTACAAAGAAATGAGGGTGAGTTGGCAGGAGCAAGCAAAGAGAGCAAGGTCAATGAAGGTGGAAATGAGGATGCAGAGATTGATGTGAATGGTGTTAGCAACTACAGTTTTGGTGAGGCTGAGGCATTAACTGATGAGATGGATGAAGAGACTCAGTATATGGGGGAGATTTTGAGGATCAAAGATGTTCTGCTTAACCGTGAAGAAGAGTCTGAGTCTGTCTTATTTGAATCCCTAAGGAGGCTTCAGCTGATGGAGCTAACAGTGGATTGTCTTAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCCGAAAACGAGGATCAAAGGAAATTCGTCAACTTGCTAAAACTCTTATCGATGGCTGGAAACGAATGGTTGATGATTGGGTGAAGGCCACTGCTACCACAGCTATTGCAGCTTCAGATGAAGGCACACCCGATTCAGTTAATCCATCTGTTGTTGATGATGAAGAAGAAGAAGGACTTCCATCGCCTCCTATGGATGAAGGGGCCTTCTTTGTTGCTCCAACTGAGACTGACTTGTACTTTTCTCTGTTGATTGTCAATTTCCTCAATGCTGTAAAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCGACCAAGTGGTCCATCCCACAAGAATCGTGACAATAATGGCAGAAAGCCAGTCATCCCTAACAGGGAGGATAAGAGTGAACAAGGAAAGAGAAATGTGGCTGATGTGCCAGTGAGGCCAAATAAGCCAGTAAGCTCTGATTCTGGCCCTGGCAGACCCCTCCCATCTAATAATATGCAGAGAAAAAGCAATGTGGAGCCAAAGATGCAGCAAAAAATAGAGAACAATTCAATCACAAGGAGGCCTCCCATTGGTCATCTAGATAAACCCATGCATTCAGATGATGCGGCTGTCCAAGTAAAGCTAGAAGCCACCAAGAGGAGACTTCAGGAGAGTTATCAACAAGCTGAAAATGCCAAGAGACAGAGAACAATCCAAGTTATGGAGATAAATGATCTCCCGAAGAATGTTAACTACCGAAATCCACATTCGAAGCCCGGTTTCCACAATAGGAACCGGGCTAATACTCGAAGGTAG 1347 0.4543 MKSWSVDEWREYFVSANSDIFEIIENAIIVAATDCPKEFKVKRDAIAERLFCSRLTRCAGCDRVELAARGVGKESDDEGCKNGVQRNEGELAGASKESKVNEGGNEDAEIDVNGVSNYSFGEAEALTDEMDEETQYMGEILRIKDVLLNREEESESVLFESLRRLQLMELTVDCLKATEIGKAVNPLRKRGSKEIRQLAKTLIDGWKRMVDDWVKATATTAIAASDEGTPDSVNPSVVDDEEEEGLPSPPMDEGAFFVAPTETDLYFSLLIVNFLNAVKFFDGMDDDGNPRPSGPSHKNRDNNGRKPVIPNREDKSEQGKRNVADVPVRPNKPVSSDSGPGRPLPSNNMQRKSNVEPKMQQKIENNSITRRPPIGHLDKPMHSDDAAVQVKLEATKRRLQESYQQAENAKRQRTIQVMEINDLPKNVNYRNPHSKPGFHNRNRANTRR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03218 448 CDD TFIIS_I 139 211 - -
Vimu6g03218 448 MobiDBLite consensus disorder prediction 223 252 - -
Vimu6g03218 448 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
Vimu6g03218 448 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 128 223 IPR035441 -
Vimu6g03218 448 Coils Coil 389 416 - -
Vimu6g03218 448 SMART TFS2_5 137 212 IPR003617 GO:0005634
Vimu6g03218 448 MobiDBLite consensus disorder prediction 286 382 - -
Vimu6g03218 448 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Vimu6g03218 448 MobiDBLite consensus disorder prediction 340 368 - -
Vimu6g03218 448 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 435 IPR044805 -
Vimu6g03218 448 MobiDBLite consensus disorder prediction 422 448 - -
Vimu6g03218 448 MobiDBLite consensus disorder prediction 291 322 - -
Vimu6g03218 448 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 135 217 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03218 Vimu-Chr6 28712444 28714925 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vimu6g03218 Med26 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03218 - - gmx:100799367 610.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03218 6 28712444 28714925 Vimu6g03218 6 28712444 28714925 ECH
Vimu6g03218 6 28712444 28714925 Vimu3g00657 3 7138235 7143045 PCT