Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03217 ATGGATTCGGGAGACGACAAGACAGCTTCAGCCTCCTCATCGTCAGAATTATTCCTTCTCGGCTTCATCGAGGCCAACATCGTCGGCGTGCAGCACCATCACGCCACCATCAGCGGCCGCGCCGTCGTCGTTCTCCACCGTGAGCCCGACAACATCCACGACGCCAACGCCATCAAAGTCACCAACATCCACGGAGACCACGTCGGCTACATTGAACGCACCGTCGCAGCCGTCCTCACCCCTCTCATCGACAACGAACTTATCACCGTCGCAGCCATCGTACCCGACGCCCGCAAGACCTACCGAATCCTCTGCCAAATCCACATCTTCGCTCGCCTCCAAGACTTTGACGTCGTCAAATGTGCCCTTTCCCGTTGCCCCTGCAGACTCATCAACGAATCCGAGGCCGCCTTCACCCTCTCTGACTCCGCCGCCGTTAAAGCCACCAAGGCAGTGAAGAACACCATGACCGTCGACGCCATTTTCAGCCTCATGAACAGCAACCTTGCCAATAAGAACCGCGCCATCGATTTCTTGGAGCCTCCGAAGAGCATCATCAGAACCGAGCTTCTCCCTCACCAGAAGGAGGGTCTCGCGTGGCTCTTTCGCAGAGAAAAAACCGATGACTTGCCACCCTTTTGGGAAGAAAACGATGGGAAGTTCGTAAATATTTTAACCGATTATCAGACCGATAAAAGGCCTGACCCCTTGCGAGGTGGTATCGTCGCCGATGAGATGGGGTTGGGAAAGACCTTAACTCTGCTTTCTCTGATTGCTTTTGATAAAATGAGCCAAATGGGTGTCTCTATGAAATGTAGAACGGATGGAACGTGGGTTTCTTTAGAGAAGCGACGCAGGAATGAAATTGAGGGCTATTGTGGAACCGGATTGAGAACAAACGCAACCTTGGTGGTGTGTCCTCCTTCTGCTATGTCGGCATGGATAACGCAATTAGAGGATCACACTGTACCTGGTGCATTGAGGACTTACTTGTATTACGGGGAAAGAAGGACAGAGGACACTGAGGAGCTAAAGAAGTATGATTTGGTATTGACTACTTACACTACTTTGTCCAATGAATTGGACCAGATGCCGGCGAAGCAAATGGAGTGGCGGAGAATTATATTGGACGAAGCACACACCATCAAGAATTTCACTGCCAACCAGAGTAAGACGGTTTTCGGGTTGAAAGGTCAGTACAGATGGGCAGTCACAGGGACACCGATTCAAAGTGGTTGCATTGATTTGTATTCTTTTATGGTCTTTTTGCGGTTTCAGCCGTTTTCGGAGCGAAGATATTGGAAAAATTTGGTGCAAACCCCTCTTAATCTGGGTTTGGAAAACGGGTTCACACGGTTGCAGATTTTGATGGGAGCAATTGCTTTGCGAAGAACAAAAGATTTGGCATTGACGTGTCTGCCACCTAAAACCGTTGAGATTTGTTATGTTGAGCTTTCTATGGAAGAACGGCAGCTGTATGAGAGGGAGAAAGAGAAAATAAAGGCATTGTTGAGAAGAAAATATACCCGTGAGAGCAATCCACTTGCCGAGTATAGCGAAGTGCTAAATAGTTTTCTAATACTCCGTCAAATCTGTGCTGATTTGAAATTGTGTCAATTTCAGTCAGATAGCAGCAGCAGCATCATCAGAGATAGTGAAGGAGAATCAATTATATCTTATAATCCCGAATTGCTGCAAAAATTACTTGGACAGCTGGAAGAAGGTGAAGATTTTGAATGTCCAATCTGTTTATCTCCTCCAATGGAAATTGTGATCACACGTTGTGCTCACATTTTCTGTCGTCCGTGTATACTGAGATCTCTAGAAGAGAGGAAAAAAAATGGTTGTCCTCTTTGTCGGCAAAAACTCTCACCAGAATCTGATATATTCTCACCCCCTCCCCAGCCAGAGACATACACTGCGGAACTGAGCTCAGCCTCAGAAATGCCTCTATCGTCCAAGGTTTCTACTCTGATAAAATGTCTCTATGAATCAAGAAACCAAAATCCAGGTGTAAAGTCAGTTGTATTTTCACAATTTCGAAAGTTGCTGTGTTTACTTGAAGAGCCTCTGAATGCAGCTGGTTTCAAGACTCTGCGTCTTGATGGGAAAATGAATGCTAAACAGAGAGCCAATGTTGTTGAGCAGTTTCAAGCCGGAGGAAGTGATAGTTGTCCAACTGTTCTGCTTGCAAGCCTGAGGGCTTCAAGTGCAGGTGTAAATCTGACAGCTGCCTCTAGACTCTACTTTATGGAGCCATGGTGGAACCATGCAGTTGAGGAACAGGCAATGGACCGTGTCCACCGCATTGGACAGAAGCAGCCCGTGAAGATTGTTCGATTCATTGCTCAAAACAGCTTTGAGGAGAAAATGTTGGTGTTGCAGGAAAGGAGGAAACGACTGTCCAAAGAACCATATGCGACGCAAAGTAAGGGCATTGACTATCGAGATATGAAATTCCTTCTAGATTCTTAG 2475 0.4699 MDSGDDKTASASSSSELFLLGFIEANIVGVQHHHATISGRAVVVLHREPDNIHDANAIKVTNIHGDHVGYIERTVAAVLTPLIDNELITVAAIVPDARKTYRILCQIHIFARLQDFDVVKCALSRCPCRLINESEAAFTLSDSAAVKATKAVKNTMTVDAIFSLMNSNLANKNRAIDFLEPPKSIIRTELLPHQKEGLAWLFRREKTDDLPPFWEENDGKFVNILTDYQTDKRPDPLRGGIVADEMGLGKTLTLLSLIAFDKMSQMGVSMKCRTDGTWVSLEKRRRNEIEGYCGTGLRTNATLVVCPPSAMSAWITQLEDHTVPGALRTYLYYGERRTEDTEELKKYDLVLTTYTTLSNELDQMPAKQMEWRRIILDEAHTIKNFTANQSKTVFGLKGQYRWAVTGTPIQSGCIDLYSFMVFLRFQPFSERRYWKNLVQTPLNLGLENGFTRLQILMGAIALRRTKDLALTCLPPKTVEICYVELSMEERQLYEREKEKIKALLRRKYTRESNPLAEYSEVLNSFLILRQICADLKLCQFQSDSSSSIIRDSEGESIISYNPELLQKLLGQLEEGEDFECPICLSPPMEIVITRCAHIFCRPCILRSLEERKKNGCPLCRQKLSPESDIFSPPPQPETYTAELSSASEMPLSSKVSTLIKCLYESRNQNPGVKSVVFSQFRKLLCLLEEPLNAAGFKTLRLDGKMNAKQRANVVEQFQAGGSDSCPTVLLASLRASSAGVNLTAASRLYFMEPWWNHAVEEQAMDRVHRIGQKQPVKIVRFIAQNSFEEKMLVLQERRKRLSKEPYATQSKGIDYRDMKFLLDS 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03217 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 807 IPR027417 -
Vimu6g03217 824 SMART HIRAN_2 20 113 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vimu6g03217 824 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 231 426 IPR014001 -
Vimu6g03217 824 Pfam Zinc finger, C3HC4 type (RING finger) 580 619 IPR018957 GO:0046872
Vimu6g03217 824 Gene3D - 11 130 - -
Vimu6g03217 824 Pfam SNF2-related domain 193 536 IPR000330 GO:0005524|GO:0140658
Vimu6g03217 824 Coils Coil 486 506 - -
Vimu6g03217 824 SMART ultradead3 186 434 IPR014001 -
Vimu6g03217 824 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 657 821 IPR001650 -
Vimu6g03217 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 465 IPR027417 -
Vimu6g03217 824 Coils Coil 784 804 - -
Vimu6g03217 824 ProSitePatterns Zinc finger RING-type signature. 595 604 IPR017907 -
Vimu6g03217 824 CDD SF2_C_SNF 648 782 - -
Vimu6g03217 824 SMART ring_2 580 619 IPR001841 -
Vimu6g03217 824 SUPERFAMILY RING/U-box 563 630 - -
Vimu6g03217 824 Gene3D - 474 819 IPR027417 -
Vimu6g03217 824 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 168 821 - -
Vimu6g03217 824 Pfam Helicase conserved C-terminal domain 655 771 IPR001650 -
Vimu6g03217 824 Gene3D - 227 465 IPR038718 -
Vimu6g03217 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 552 643 IPR013083 -
Vimu6g03217 824 Pfam HIRAN domain 20 107 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vimu6g03217 824 SMART helicmild6 685 771 IPR001650 -
Vimu6g03217 824 ProSiteProfiles Zinc finger RING-type profile. 580 620 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03217 Vimu-Chr6 28648695 28651660 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03217 15 811 RAD5 or RAD16-like Gene Family AT5G05130 51.703 0.0 832
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu6g03217 SNF2_N 2.6e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03217 K15711 - gmx:100791783 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03217 6 28648695 28651660 Vimu6g03217 6 28648695 28651660 ECH