Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03216 ATGGCATCAAGTTCAATGTCAGCCTCAGGCTCCTGGAGTGTCAAGGACAACAAGGCCTTTGAGAAGGCTCTTGCTGTTTACGACAAGGACACCCCCGACCGTTGGTACAATGTTGCCCATGCTGTTGGTGGCAAAACTCCAGAGGAAGTGAAGAGACACTATGAACTCCTTGTCCAGGATGTTAAACATATTGAGTCTGGACGAGTGCCATTCCCAAATTACAAGAAAACTGCATCCTCTGATCAAGAGGAGAAAAGGGCAAAGAATAATCTCTCAATCAAGAAAGAAGAAACTGAGGAATTTGAACCTCCAGTGACCCATAGCCAACAACAACAACAAATTGATTTTCTAATTTTCATCAACCAACATCTTCAGTTTCCAGCATCCCTGGTAGTACTACGTGGTGCTATGTCACACATAATTGCTAGTGCAATGGCACTTTAG 444 0.4392 MASSSMSASGSWSVKDNKAFEKALAVYDKDTPDRWYNVAHAVGGKTPEEVKRHYELLVQDVKHIESGRVPFPNYKKTASSDQEEKRAKNNLSIKKEETEEFEPPVTHSQQQQQIDFLIFINQHLQFPASLVVLRGAMSHIIASAMAL 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03216 147 CDD SANT 18 58 IPR001005 -
Vimu6g03216 147 MobiDBLite consensus disorder prediction 72 106 - -
Vimu6g03216 147 Gene3D - 2 71 - -
Vimu6g03216 147 FunFam Transcription factor SRM1 4 71 - -
Vimu6g03216 147 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Vimu6g03216 147 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Vimu6g03216 147 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Vimu6g03216 147 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 86 IPR044636 GO:0003700
Vimu6g03216 147 SMART sant 8 60 IPR001005 -
Vimu6g03216 147 MobiDBLite consensus disorder prediction 78 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03216 Vimu-Chr6 28637437 28638111 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu6g03216 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03216 - - gmx:100818368 169.859