Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03213 ATGTCCTCACTGGTAAAGTCATTTCCAGAAGCTGATAAGGTGAAACACTTGCCTGAACAGTCACCTGTTTCCTTCCAACAATTTGCTGGCTATGTACCCGTTGATGACAATGATCAGAGAGCTCTTTTTTACTACTTTGTTGAAGCACAAAGGAACCCTTCTTCAAAGCCTCTAGTTCTCTGGCTCAATGGAGGGCCTGGCTGCACATCTGTTGGAATTGGAGCCTTCACCGAACATGGTCCTTTTGTTACAAATCAAGGAAAGGCTATTCAGAAAAATCAGTATAGTTGGAACAAAGAGGCAAACATTTTGTACCTGGACTCACCAGCAGGTGTTGGATTCTCTTACTCTCTCAATCTGTCATTTTATAAAGCTCTGAACGATGAAGTTACAGGTCACTATGTACCTCAACTTGCTGAACTCATTATTAAGAGTAAATTAAATTTCAACCTAAAGGGCATAGCAATAGGAAATCCTCTTCTGGATTTTGACACTGATATGAATGCAGTTGATGAATATTACTGGTCTCATGGAATCATAAGTGATCATGCATACAAAATCAAGATCTCTCTGTGTAACTCATCCAGACTATTAAGAGAATACTTCAGTGGCAGTCAACTTTCCAACGATTGTCTTCTTGCAGCTGAAAAAGTCTCAGAAGAATATTCCTTTACATCCTTCGTAGATCCATATTACGTCATCGGCGACAGATGTCTTTCTTACAATGTTTCTCAGGCAGGTTTTCTTAAGGAGATGCTAAGTTCAGGGATGTTTCAGTTTAGGAACTCCCATGATGTGCTTCAAACCCAAAAACCAGACCAGCAAGTTGATGAGTGTAGTATGAAATATTCAGAGAAGTACTTGAACAGGAAAGATGTGCAGAAGGCTCTTCATGCCCGGCTGGGTATGGTAGGTACGGTGTCTGGTTCTCCTGCTGACACTTCTTCCAATGTCAGGATTGTACTCACAAATTATGACCCATCCAACAGAGAGATACCGACAATTAATGTTGTCGGCTTCCTTGTAAAATCAGACTCTGTGATTCCATTCATGGGCACCAGAAGATTAGTTGATAAACTTGCAAGGAAAGTAGGGCTTAAAACCACAGTGCCTTACAGTGCTTGGTTTGTGGACAAACAGGTTGGAGGATGGGCACAAGTTTTTGGGAATCACCTTACCTATGCCATGGTGAGAGGAGCTTCACATGGCACTCCAACTACCCAACCAAAGAGATCTTTTGTTTTGTTTAATGCTTTTCTCCATGGGAAACCACTGCCTAAAGCATGA 1287 0.4149 MSSLVKSFPEADKVKHLPEQSPVSFQQFAGYVPVDDNDQRALFYYFVEAQRNPSSKPLVLWLNGGPGCTSVGIGAFTEHGPFVTNQGKAIQKNQYSWNKEANILYLDSPAGVGFSYSLNLSFYKALNDEVTGHYVPQLAELIIKSKLNFNLKGIAIGNPLLDFDTDMNAVDEYYWSHGIISDHAYKIKISLCNSSRLLREYFSGSQLSNDCLLAAEKVSEEYSFTSFVDPYYVIGDRCLSYNVSQAGFLKEMLSSGMFQFRNSHDVLQTQKPDQQVDECSMKYSEKYLNRKDVQKALHARLGMVGTVSGSPADTSSNVRIVLTNYDPSNREIPTINVVGFLVKSDSVIPFMGTRRLVDKLARKVGLKTTVPYSAWFVDKQVGGWAQVFGNHLTYAMVRGASHGTPTTQPKRSFVLFNAFLHGKPLPKA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03213 428 SUPERFAMILY alpha/beta-Hydrolases 11 426 IPR029058 -
Vimu6g03213 428 Gene3D - 332 422 - -
Vimu6g03213 428 Gene3D alpha/beta hydrolase 130 240 IPR029058 -
Vimu6g03213 428 Pfam Serine carboxypeptidase 20 123 IPR001563 GO:0004185|GO:0006508
Vimu6g03213 428 Pfam Serine carboxypeptidase 132 422 IPR001563 GO:0004185|GO:0006508
Vimu6g03213 428 PRINTS Carboxypeptidase C serine protease (S10) family signature 392 405 IPR001563 GO:0004185|GO:0006508
Vimu6g03213 428 PRINTS Carboxypeptidase C serine protease (S10) family signature 93 105 IPR001563 GO:0004185|GO:0006508
Vimu6g03213 428 PRINTS Carboxypeptidase C serine protease (S10) family signature 106 116 IPR001563 GO:0004185|GO:0006508
Vimu6g03213 428 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 131 409 IPR001563 GO:0004185|GO:0006508
Vimu6g03213 428 Gene3D alpha/beta hydrolase 9 129 IPR029058 -
Vimu6g03213 428 Gene3D - 279 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03213 Vimu-Chr6 28599484 28602005 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03213 287 425 Calmodulin-binding Proteins AT2G22960 23.022 1.62e-09 55.5