Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03209 ATGGCAAAGCGATTGATTCCACTGTTCAATCGTGTTTTGGTGGAGAAAATCGTGCCTCCATCAAAGACCAATGCTGGCATTTTGTTACCAGAGAAATCCTCCAAGCTGAATTCCGGGAAAGTTATTGCTGTTGGCCCTGGCATTCACAGTAAGGATGGGAAGCTAATTCCAGTAGCTGTAAATGAAGGTGACACTGTTCTTTTGCCTGAGTATGGGGGAACTGAGGTGAAGCTTGACAACAAAGATTCTAAATACTATCGGGGACTGCCTGCCGATGGTATAAATAACTTGAAACTCCGTGTGTTATTGAAAATGTATGATTTCAACCAGGAAGATGTTGAAAATAGAAATTTTACTCGAAGTTATGAGAGTGGTATCATCTTTATAGAGACGACGATATTCTCGGGACACTGCACGATTGATGTTAAACTCATTAGCAGACTGATGTTAAACTTGTTGGCAGATGTTGCTGTAGTAAAATTTATATGCCCGGTGTTCTATTACGTTTGGATTAAACAATTTCTTTCTGTCTAA 534 0.3989 MAKRLIPLFNRVLVEKIVPPSKTNAGILLPEKSSKLNSGKVIAVGPGIHSKDGKLIPVAVNEGDTVLLPEYGGTEVKLDNKDSKYYRGLPADGINNLKLRVLLKMYDFNQEDVENRNFTRSYESGIIFIETTIFSGHCTIDVKLISRLMLNLLADVAVVKFICPVFYYVWIKQFLSV 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03209 177 Pfam Chaperonin 10 Kd subunit 5 82 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu6g03209 177 CDD cpn10 4 82 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu6g03209 177 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 83 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu6g03209 177 FunFam 10 kDa chaperonin, mitochondrial 1 92 - -
Vimu6g03209 177 SUPERFAMILY GroES-like 4 84 IPR011032 -
Vimu6g03209 177 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu6g03209 177 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu6g03209 177 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu6g03209 177 Gene3D GroES chaperonin 1 95 IPR037124 GO:0006457
Vimu6g03209 177 SMART Cpn10_2 4 102 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03209 Vimu-Chr6 28578014 28579765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03209 3 94 Calmodulin-binding Proteins AT5G20720 39.785 4.41e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03209 K04078 - gmx:100306384 159.844