Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03204 ATGCACCACTCACCCATGGACAACTCTCACCTTCTTCAATTCCTTCCAAACAACGCCACCAACAATACCAACCCTTTCTTCCACACTCCTCCTCACACCACCAACATCATGCACCAACACCACACCCTCTCTAATAACTCTTCCTCCAATCACTTCTACCCCTTTCATGTCTCCCAAATTACCCCAACACCCTCCCACCATGATAGAGCCCTTGCTGCCATGAAGAACCACAAGGAAGCTGAGAAGAGAAGGAGGGAGCGAATCAACTCCCACCTCGATGAGCTTCGCACTCTTCTCCCTTGCAATTCCAAGACGGACAAGGCTTCGCTTCTGGCGAAGGTTGTGCAGCGAGTGAAGGAATTGAAGCAGCAAACGTCGGAGATAACGGAGCTGGAGACGGTTCCGTCCGAAACAGACGAGATCACGGTGCTCTCCACCGGCGGGGACTACGGCAGCGATGGGAGGCTGGTGTTCAAGGCCTCGCTGTGCTGCGAGGACCGCTCCGATCTCATTCCTGACCTCATAGAAATCCTGAACTCGCTTCACCTGAAAACCCTCAAAGCAGAAATGGCCACGCTCGGAGGAAGAACGCGCAACGTTCTCGTGGTGGCTGCAGACAAAGAACACAGCATCGAATCCATCAATTTCCTTCAGAACTCGCTCAAGTCCTTGCTAGACAGGTCCAATTCCAGCGACAGATCGAAACGTCGCCGTGGCCTAGACCGAAGGCTAATGTCTTAA 741 0.529 MHHSPMDNSHLLQFLPNNATNNTNPFFHTPPHTTNIMHQHHTLSNNSSSNHFYPFHVSQITPTPSHHDRALAAMKNHKEAEKRRRERINSHLDELRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLSTGGDYGSDGRLVFKASLCCEDRSDLIPDLIEILNSLHLKTLKAEMATLGGRTRNVLVVAADKEHSIESINFLQNSLKSLLDRSNSSDRSKRRRGLDRRLMS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03204 246 CDD bHLH_AtAIG1_like 68 143 - -
Vimu6g03204 246 PANTHER TRANSCRIPTION FACTOR BHLH30 39 240 IPR045847 GO:0003700|GO:0006355
Vimu6g03204 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Vimu6g03204 246 Coils Coil 78 98 - -
Vimu6g03204 246 SMART finulus 78 127 IPR011598 GO:0046983
Vimu6g03204 246 MobiDBLite consensus disorder prediction 228 246 - -
Vimu6g03204 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 129 IPR036638 GO:0046983
Vimu6g03204 246 Gene3D - 67 133 IPR036638 GO:0046983
Vimu6g03204 246 MobiDBLite consensus disorder prediction 227 246 - -
Vimu6g03204 246 FunFam transcription factor bHLH30 67 130 - -
Vimu6g03204 246 Pfam Helix-loop-helix DNA-binding domain 76 121 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03204 Vimu-Chr6 28505093 28506277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03204 52 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 68.306 7.29e-78 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g03204 HLH 4.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03204 - - gmx:100802566 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03204 6 28505093 28506277 Vimu6g03204 6 28505093 28506277 ECH
Vimu6g03204 6 28505093 28506277 Vimu3g00721 3 7994738 7996033 PCT