Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03201 ATGGGGCTGTGTCATGGAAAACCCGTTGAAACCTCACGAAGTGAAGGTGGGCACCACGTTTTCCCCGGCGAGAAAGAGGTGGTGGTGGCAGCGAGTCCCAAAACCTCCACGAAAGGTTCAAAGTTTCCGTTTTACAGCCCAAGCCCGTTGCCGAGCCTGTTCAAGAACTCGCCGGCGAACTCTAGTGTGAGTTCGACTCCTCTGCGGCTTTTCAAGCGGCCCTTTCCGCCTCCGTCGCCGGCTAAGCACATTCGGGCCTTACTGGCCCGCCGCCACGGCTCCGTCAAGCCCAATGAAGCCTCCATCCCAGAAGGGAGTGAGTGTGAGGTTGGGCTCGACAAGAGCTTCGGCTTCTCCAACCACTTCCACACTCACTATGAGCTTGGGCCAGAAGTGGGCCGTGGTCACTTTGGCTACACTTGCTCTGCCAAGGGAAGAAAGGGCACCTTCAAGGGTCATGATGTTGCTGTCAAAGTCATTCCAAAGTCCAAGATGACAACAGCAATTGCTATAGAGGATGTCAGGAGAGAAGTAAAAATATTGCGAGCTCTGACTGGGCACAAGAATCTGGTGCAATTCTATGATGCCTATGAAGACAATGATAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGTGAACTGCTTGATAAGATTCTTTCCAGGGGTGGAAAGTACTCAGAAGAGGATGCAAGGATTGTTATGATTCAGATATTAAGCGTGGTAGCTTTCTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCAGAGTTCCATACCCCAAATGATTCTTTCGTTTTGGCATTTTATACTGTTTTCCTCATTTTTAAGAAAGCTGATTTTCTGCTGCAGAATTTTCTCTACATTTCTACGGAGGAAAATTCCACTCTGAAGGTCATTGATTTTGGACTCTCGGACTATGTGAAGCCAGATGAAAGGTTGAATGATATTGTTGGAAGTGCATATTATGTAGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCTTATATTCTTTTATGTGGAAGCCGACCCTTTTGGGCAAGGACAGAATCTGGCATATTTCGGGCCGTCCTGAAGGCAGATCCAAGTTTTGATGAAGCCCCTTGGCCATCTTTATCAGCTGATGCAGTAGATTTTGTAAAGAGACTGTTGAACAAAGATTATCGGAAAAGGCTAACTGCAGCTCAGGCCCTCAGTCATCCATGGCTGACGAGTCATTGTGATGATGTGAAGATACCTTTTGATATGATAATCCACAAGCTTGTTAAAGCTTATATATGCTCATCTTCTTTACGCAAATCAGCATTAGGGGTATGCTCTTGCAAAGACATTAACATTAGTGCAGCTAGCATATCTGAGAGAACAGTTCAACATGTTAGGGCCAAACAAAAGCGGGTTAATCTCCATGCAGAACTTCAAGACGGTCAGTGGCACACGTCCAAAGTTGTTGTGTACTCTTTTCTGCAGCCACTAACACATTTGCATGAACAGGGTATTTTGAGGAGTGCCACCGATGCCTCAAAGGATTCAAGGGTCTTAGATTATGTTAACATGGTTAGTTCAATCCAATATCGGAAATTAGATTTTGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAACTAGAGGGAATGGAGAGCTGGGAGCAACATGCAAGGCGTGCCTATGAGTTGTTTGAAAAGGAAGGAAATAGACCAATTATGATTGAAGAGCTTGCCTCGGAACTTGGTCTTAGCCCTTCAGTACCAATTCATGTGGTACTGCAAGATTGGATAAGACACTCAGATGGGAAGCTGAGCTTCTTGGGGTTTGTTAGACTCCTCCATGGGGTTTCTTCTCGCACATTTCAGAAGGCTTGA 1896 0.4557 MGLCHGKPVETSRSEGGHHVFPGEKEVVVAASPKTSTKGSKFPFYSPSPLPSLFKNSPANSSVSSTPLRLFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPEGSECEVGLDKSFGFSNHFHTHYELGPEVGRGHFGYTCSAKGRKGTFKGHDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYDAYEDNDNVYIVMELCKGGELLDKILSRGGKYSEEDARIVMIQILSVVAFCHLQGVVHRDLKPEFHTPNDSFVLAFYTVFLIFKKADFLLQNFLYISTEENSTLKVIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSADAVDFVKRLLNKDYRKRLTAAQALSHPWLTSHCDDVKIPFDMIIHKLVKAYICSSSLRKSALGVCSCKDINISAASISERTVQHVRAKQKRVNLHAELQDGQWHTSKVVVYSFLQPLTHLHEQGILRSATDASKDSRVLDYVNMVSSIQYRKLDFEEFCAAAISVHQLEGMESWEQHARRAYELFEKEGNRPIMIEELASELGLSPSVPIHVVLQDWIRHSDGKLSFLGFVRLLHGVSSRTFQKA 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03201 631 Gene3D Transferase(Phosphotransferase) domain 1 213 440 - -
Vimu6g03201 631 ProSiteProfiles Protein kinase domain profile. 126 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03201 631 CDD STKc_CAMK 125 414 - -
Vimu6g03201 631 PANTHER SERINE/THREONINE-PROTEIN KINASE 112 607 - -
Vimu6g03201 631 ProSitePatterns Protein kinases ATP-binding region signature. 132 158 IPR017441 GO:0005524
Vimu6g03201 631 SUPERFAMILY EF-hand 521 622 IPR011992 -
Vimu6g03201 631 Pfam Protein kinase domain 126 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03201 631 Pfam Protein kinase domain 285 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03201 631 FunFam CDPK-related kinase 3 118 267 - -
Vimu6g03201 631 Gene3D - 550 619 - -
Vimu6g03201 631 MobiDBLite consensus disorder prediction 1 22 - -
Vimu6g03201 631 FunFam - 286 433 - -
Vimu6g03201 631 Gene3D - 527 549 - -
Vimu6g03201 631 SUPERFAMILY Protein kinase-like (PK-like) 118 442 IPR011009 -
Vimu6g03201 631 FunFam CDPK-related kinase 1 119 214 - -
Vimu6g03201 631 Gene3D Phosphorylase Kinase; domain 1 122 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03201 Vimu-Chr6 28460521 28465104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03201 1 629 EF-hand Containing Proteins AT3G50530 59.038 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu6g03201 Pkinase 2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03201 K13412 - gmx:100803625 993.801