Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03200 ATGCCTTACACGGTACGAGAGAACCTCTCCATCGGCAACATCGGCGACGCGGCCGGGATTCTTCAAAACGACACCGTTCACAGTGTCACGCACATTCTCTCCGTCCTCAGCTCTGCCTCCATCTCCTTCTTCTCTGAATGGCGTCCCAGTCTCTCCATTCCTGCCAAGGAAATCACCAAAGTCCATGTGGCGGACGCCGGTGCTAGTGCCGCCAAATCGGCGCTCGCGCCGGATAAGCTTCTTTACTCGCTCGAGTACGCCGGTCGCGACTTGAAGCTCGTAAGGATGGCCGTGCCTCTCCGAGACACCGAGAACGAGAACTTGTTGGATTACCTGGAAGTTTGCATCGATTTCATTGATCGCGGTCGGAAGGAAGGTTCCGTTCTCGTCCACTGTTTCGCCGGAGTTTCCAGAAGGTGCTGA 423 0.5603 MPYTVRENLSIGNIGDAAGILQNDTVHSVTHILSVLSSASISFFSEWRPSLSIPAKEITKVHVADAGASAAKSALAPDKLLYSLEYAGRDLKLVRMAVPLRDTENENLLDYLEVCIDFIDRGRKEGSVLVHCFAGVSRRC 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03200 140 Gene3D Protein tyrosine phosphatase superfamily 1 139 IPR029021 -
Vimu6g03200 140 Pfam Dual specificity phosphatase, catalytic domain 95 138 IPR000340 GO:0008138|GO:0016311
Vimu6g03200 140 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 106 140 IPR000387 GO:0016311|GO:0016791
Vimu6g03200 140 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 138 - -
Vimu6g03200 140 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 5 138 IPR029021 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03200 1 139 Protein tyrosine phosphatase (PTP) family AT3G23610 30.282 3.90e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03200 K14819 - gmx:100804683 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03200 6 28443095 28443517 Vimu6g03200 6 28443095 28443517 ECH