Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03182 ATGGGTAGCAGAAGTAGAACGGTAAACGTTACCAGTAAGGACACCAACAAGGTTGTGAACGGGATGCCTAGCTACGCTCCTCCATTGCCTTCTTCGAGTTCCATGGGCATAGAAGCAACTAATGTTCATCCTTCCCGCATTTCTGAATTTGGAACCCTAGAGCAATCTCTTGGATTTCGTGTCGAGGATACCATTAACCTTAGCAGAAATCCAGTGTTTAGTCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGAGCTTTAAATAAGGTGCAGTCAATTGTAACATCAGATATAAATCTTTCTGCTGCTATTGCTGGGTCTCAGACATTGGCACTACAGAAGGATGCACAACCAAATCTTGCTTCAACATCTGGTCATCGTGAGAATTGGGGAGAGACCAACATGGCTGATGCTAGCCCCAGGACCGATACTTCAACAGATGACACGGAAGACAAAAATCAACTGCCTGAAAGGGGTGAATCCAGTGATAGATCTAAAGATAAATCAGATCAAAAGACCTTAAGACGGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGCTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCACTGGAGATCAGGCCCAGTCAATGAGTGGAAATGGTGCTATGGCGTTTGATGTAGAGTATGCACGATGGCTTGAAGAGCATAACAGGCAAACAAATGAGCTAAGGGCAGCAATAAATTCCCATGCTGGAGATATTGAACTTCGAACGATTGTGGATAATTTCATGGCTCAATTTGATGATATCTTCAGGCTGAAAGGTATTGCAGCAAAAGCTGATGTTTTCCACATTCTGTCAGGGATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGCTCGTCTGAACTCCTCAAGCTTCTTGTGAGTCAGTTGGAGCCTCTAACTGAGCAACAATTAATGGGCATATACAATTTGCAGCAGTCATCCCAGCAGGCTGAAGATGCTCTTTCCCAAGGGATGGATGCATTACAGCAATCACTGTCTGAGACACTGGCTAATGGTTCACCCAATTCATCGGGCTCCTCGGGAAATGTGGCAAATTACATGGGGCAAATGGCTATGGCCATGGGAAAGCTTGGACTTCATATTCCACTTCCAAGAGTGTTCATTGCATATTTGCATGCCTTAGGAGAGCCTAAAACAAACACTCCAACAGATGCTTCGGATATTAACAACCAGGCAATCGGCTCGAGCTCTTCTGGCGATCAGCGACTATTTCTCGCGGCTGCGAGCACTGAGTTCTTTGTGGCTTGCCAGGCCAAGGGAGTGAAGCATTGGGAAGGATCCATCTGTGGTCTTTTTTTCAAGCCTGATGAGATGACCCTTTTGAAGACTGATGACTGA 1482 0.4568 MGSRSRTVNVTSKDTNKVVNGMPSYAPPLPSSSSMGIEATNVHPSRISEFGTLEQSLGFRVEDTINLSRNPVFSQMKSNSQALGADIQFGALNKVQSIVTSDINLSAAIAGSQTLALQKDAQPNLASTSGHRENWGETNMADASPRTDTSTDDTEDKNQLPERGESSDRSKDKSDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGDQAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVSQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLSETLANGSPNSSGSSGNVANYMGQMAMAMGKLGLHIPLPRVFIAYLHALGEPKTNTPTDASDINNQAIGSSSSGDQRLFLAAASTEFFVACQAKGVKHWEGSICGLFFKPDEMTLLKTDD 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03182 493 SMART brlzneu 173 236 IPR004827 GO:0003700|GO:0006355
Vimu6g03182 493 Pfam Basic region leucine zipper 173 219 IPR004827 GO:0003700|GO:0006355
Vimu6g03182 493 Pfam Seed dormancy control 260 335 IPR025422 GO:0006351|GO:0043565
Vimu6g03182 493 SUPERFAMILY Leucine zipper domain 177 220 IPR046347 GO:0003700|GO:0006355
Vimu6g03182 493 MobiDBLite consensus disorder prediction 1 32 - -
Vimu6g03182 493 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 180 195 IPR004827 GO:0003700|GO:0006355
Vimu6g03182 493 FunFam BZIP family transcription factor 176 225 - -
Vimu6g03182 493 MobiDBLite consensus disorder prediction 121 147 - -
Vimu6g03182 493 MobiDBLite consensus disorder prediction 121 179 - -
Vimu6g03182 493 MobiDBLite consensus disorder prediction 1 19 - -
Vimu6g03182 493 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 175 219 IPR004827 GO:0003700|GO:0006355
Vimu6g03182 493 CDD bZIP_HBP1b-like 177 229 - -
Vimu6g03182 493 MobiDBLite consensus disorder prediction 148 179 - -
Vimu6g03182 493 Gene3D - 176 228 - -
Vimu6g03182 493 Coils Coil 196 223 - -
Vimu6g03182 493 PANTHER TRANSCRIPTION FACTOR TGA9 129 406 - -
Vimu6g03182 493 ProSiteProfiles DOG1 domain profile. 242 474 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03182 Vimu-Chr6 28285109 28290360 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03182 140 406 bZIP Transcription Factor Family AT3G12250 72.364 2.15e-135 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu6g03182 DOG1 5.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03182 K14431 - gmx:778136 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03182 6 28285109 28290360 Vimu6g03182 6 28285109 28290360 ECH