Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03179 ATGGCCCACAACAGAAGAGACTCCGAATCTTTCACGGATGATTTCGATGGGGATGATAACGAAGAACATAACACACATTCTTCTGATTACAGGAGTGAGCACAGTAATCAATGTGACAGTGACGAGGAGGGGCATCGTAAAACGCACCCTGAATCTTCTTTCATTTCTCAGCAGTGGCCTCAAACTTATAGAGATGCCATTGATTCTTACACAATATCGGTCGCTCCAAATCTTGAATCAATAATACGAGCACCAAGTGTTATTTATTCAAGCTTTATCGGTGGTGGTTCAAAGAGTATGTTGGAACATGATGAAAGGACTTCTTTTCTATCTGGTGAGGAAATCATTCAAGCAGGGATATCAAGAAGACAATCAACATGGTGGGAGAAAGCTTCAATTCAAATGCAAATTCCTGAAGAGTTACCAACTGGTTATGGATGCAGCCTCAGTCAAACAATATTTAACGGGATTAATGTGATGGCCGGAGTTGGACTTCTTTCTACACCATATACAGTGAAACAAGCTGGGTGGGCAAGCATGCTTGTGATGCTTTTCTTTGCAATTGTATGTTGTTATACAGCAGATCTTATGAAACACTGCTTTGAAAGCGAAGAAGGTATCGTTAGCTACCCTGATATAGGAGAAGCTGCATTTGGAAGATATGGTCGCCTTATTATATCATCATATTGTGTAGAGTTTATCATCTTGGAAGGAGATAACCTCTCTGGGTTGTTTCCCGGAACATCCTTAGATTGGGGGAGTTTCCACTTGGATTCCAAACACTTGTTTGGAGTTTTAACTGCACTTATCATTCTTCCTAGTGTTTGGTTAAAGGATCTACGCATACTCTCCTATCTCTCAGCTGGAGGGGTTGTGTCGACTACTTTGGTTATTTTGTGTGTTTTTCTTGTTGGGACAAGAGATGATGTTGGATTCCACCACAGTGGCTCATTAGTGAATTGGAGTGGCATTCCTTTTGCTGTTGGTATCTACGGGTTTTGCTTTGCAGGACATTCAGTTTTTCCAAACATTTATCAGTCTATGGCTGACAAAAGAGAATTTACCAAGGCTGTCATTGTAAGTTTTCTTATATGCACAGTTGTGTATGGAATCTCAGCTGTCATGGGATTTCTAATGTTTGGTGAAGGGACTTTGTCTCAGATAACATTGAATTTACCACGTAATGCATTGGCTTCCAAAATTGCTTTGTGGACAATAGTAATTTGTGCCGCTTTTATGATTCCATTTTTTGGTAAGGCTTGTGATGGCTTTAATAGGTTCTCTCCTCAGTCTACTAGTGGTAAGCATAAACCAGATATGATTTACAGGAATATGCACATGGCAGTGGTGTTGCCAGATATATGCTTTTTGAAAATTGTGGGAAAAAACGCAACATGTACACAGGTTGTTCTTAGCGTCATAATTGCTGTGCTTGGAATGGCTGCTGCTTTGATCGGAACATACTCATCTGTATTCAAAATTATGCAAAAATAA 1494 0.3996 MAHNRRDSESFTDDFDGDDNEEHNTHSSDYRSEHSNQCDSDEEGHRKTHPESSFISQQWPQTYRDAIDSYTISVAPNLESIIRAPSVIYSSFIGGGSKSMLEHDERTSFLSGEEIIQAGISRRQSTWWEKASIQMQIPEELPTGYGCSLSQTIFNGINVMAGVGLLSTPYTVKQAGWASMLVMLFFAIVCCYTADLMKHCFESEEGIVSYPDIGEAAFGRYGRLIISSYCVEFIILEGDNLSGLFPGTSLDWGSFHLDSKHLFGVLTALIILPSVWLKDLRILSYLSAGGVVSTTLVILCVFLVGTRDDVGFHHSGSLVNWSGIPFAVGIYGFCFAGHSVFPNIYQSMADKREFTKAVIVSFLICTVVYGISAVMGFLMFGEGTLSQITLNLPRNALASKIALWTIVICAAFMIPFFGKACDGFNRFSPQSTSGKHKPDMIYRNMHMAVVLPDICFLKIVGKNATCTQVVLSVIIAVLGMAAALIGTYSSVFKIMQK 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03179 497 PANTHER OS05G0424000 PROTEIN-RELATED 156 457 - -
Vimu6g03179 497 MobiDBLite consensus disorder prediction 1 57 - -
Vimu6g03179 497 Pfam Transmembrane amino acid transporter protein 148 408 IPR013057 -
Vimu6g03179 497 MobiDBLite consensus disorder prediction 19 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03179 Vimu-Chr6 28224266 28227869 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03179 54 419 Amino Acid or Auxin Permease AAAP Family AT2G41190 55.000 3.92e-157 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03179 K15015 - gmx:100790344 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03179 6 28224266 28227869 Vimu6g03179 6 28224266 28227869 ECH