Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03156 ATGGGGATGGCTGCAGCAGAGTCGCAGTTTCATGTGTTGGCTGTTGATGACAGCATCATAGATAGGAAACTCATCGAAAGGCTCCTCAGAACCTCTTCCTACCAAGTTACTACGGTTGATTCTGGTAGCAAGGCTTTGGAGTTTCTGGGGTTGCGTGAGAATGAAAACACCAACCCAAGCACGCCATCTGTTTCTCCCAACAACAACCATCAGGAGGTGGAGGTGAATCTTGTGATAACAGATTACTGTATGCCTGGCATGACAGGCTATGACTTGCTTAAGAAAATCAAGGAATCTTCATCTTTGAGAAACATACCAGTGGTGATTATGTCATCTGAGAATGTGCCTTCAAGGATCAGCAGATGCTTGGAGGAAGGAGCAGAAGAATTTTTCTTGAAGCCTGTGAGGCTGTCAGATTTGAACAAGCTTAAACCCCACATGAAGAAAACTAAGTCGAAAGAGCAAAGGCAAGTAACAGCAGAAGAGATTGAAAACTCACAAGTTCTACAGCATCAGACACAGCAAATTCTTCAAAATGACCAGCAACAAGCACCAAAACCGCAAGATCCTCAACCAGATTCAGAGTCACGTCCACAACAAACTATAGAACAACAGCAACAATCACTACAACAAGCCAACAATAACAAGAGAAAGACCATGGAACAGGGGCTTTCACCTGAGACTGACAGAACAAGACCGAGATACAGCGGTATAGCTACTGTTGTATGA 729 0.4403 MGMAAAESQFHVLAVDDSIIDRKLIERLLRTSSYQVTTVDSGSKALEFLGLRENENTNPSTPSVSPNNNHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRISRCLEEGAEEFFLKPVRLSDLNKLKPHMKKTKSKEQRQVTAEEIENSQVLQHQTQQILQNDQQQAPKPQDPQPDSESRPQQTIEQQQQSLQQANNNKRKTMEQGLSPETDRTRPRYSGIATVV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03156 242 ProSiteProfiles Response regulatory domain profile. 11 148 IPR001789 GO:0000160
Vimu6g03156 242 SUPERFAMILY CheY-like 9 149 IPR011006 -
Vimu6g03156 242 Coils Coil 202 222 - -
Vimu6g03156 242 CDD REC_typeA_ARR 12 143 - -
Vimu6g03156 242 SMART REC_2 10 144 IPR001789 GO:0000160
Vimu6g03156 242 MobiDBLite consensus disorder prediction 169 242 - -
Vimu6g03156 242 MobiDBLite consensus disorder prediction 169 221 - -
Vimu6g03156 242 Gene3D - 11 231 - -
Vimu6g03156 242 Pfam Response regulator receiver domain 12 142 IPR001789 GO:0000160
Vimu6g03156 242 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 215 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03156 Vimu-Chr6 27960039 27961792 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03156 1 242 Response Regulator Gene Family AT3G57040 62.551 5.84e-98 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu6g03156 Response_reg 1.4e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03156 K14492 - gmx:100788079 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03156 6 27960039 27961792 Vimu6g03156 6 27960039 27961792 ECH