Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03153 ATGTCAGAATCAAACGCAATTGCAAATGGATTGGCTGGTGCAGGTGGTGGAATCATTGCTCAAATCATCACTTATCCTCTTCAAACGGTAAACACGCGTCAGCAAACCGAGAGAACACTCAAGAGGAACAAGCAAAGTTTGCCTTCTAACACAACCACTGCTCCTGGCACTCTTCTTCAGATCTTTCAGGTCATTAGAACTGAGGGTTGGGGTGGACTCTACAGTGGCCTCAAGCCTTCTCTTCTTGGAACTGCTGCTTCTCAGGGCATTTACTACTATTTCTATCAAGTTTTCAAGAACAAGGCAGTGGCGATTGCAGCTGCACGGAAAGTGAAAGGGCGTGGAGATGGTACTGTTGGGATGTTTGGTTGGCTTGTTGTGGCTGCAATTGCTGGGTCCTTGAATGTGTTGCTGACAAATCCAATATGGGTTTTAGTGACTCGGATGCAGACTCATACTCAAGCAGAAAGGAAAATTATGGAGGAAAAGAAAGAAGCTTTAAGGAAGGCTGCTTCTGAGAGCGCCATAGCAGATTCCACATTGCAAGATAAATTGGATGAACTGAATTCTATAAAACCTCGACCATTTGGAACTATACATGCAGCTAAAGAAGTCTACAATGAAGCGGGTACAGTAGGATTTTGGAAGGGTGTCTTCCCTGCCCTTATTATGGTATGTAATCCATCAATTCAGTTTATGATTTATGAAAGCTCATTAAAGCATCTAAGGGCAAAACGTGCCGCTAAGAAGCAAGGGAATACAAGTATATCCGCTTTGGAGGTCTTTTTGGTGGGAGCAATAGCTAAGCTTGGAGCCACTGTGACAACATATCCATTACTAGTTGTGAAGTCAAGGCTTCAAGCAAAACAGGAGATTGGTGGAAATAACTCCTTAAGATACTCAGTATGTCGTCCTATTTCTAAAGCTATAAATGCAGGCACTTTTGATGCTGTACTTAAAATGATCCGTTATGAAGGAATAACTGGCTTCTATAAGGGGATGAGCACAAAGATAGTGCAGAGTGTTTTTGCAGCCTCTGTTCTGTTTATGATCAAAGAGGAGCTTGTTAAGGCTTTTATAGTTCTAACCAATAAGAGCAAAAAAAGAGGTGAAGTCCTCACCAAAATAATGGATGAAGTTAACTCCACTACTGTAGATGAGCCATCCTTATGTTATCCCTTTGGCATGAAGTGCTGCAGAACTCCTTGGAATTTCTCATAG 1221 0.4218 MSESNAIANGLAGAGGGIIAQIITYPLQTVNTRQQTERTLKRNKQSLPSNTTTAPGTLLQIFQVIRTEGWGGLYSGLKPSLLGTAASQGIYYYFYQVFKNKAVAIAAARKVKGRGDGTVGMFGWLVVAAIAGSLNVLLTNPIWVLVTRMQTHTQAERKIMEEKKEALRKAASESAIADSTLQDKLDELNSIKPRPFGTIHAAKEVYNEAGTVGFWKGVFPALIMVCNPSIQFMIYESSLKHLRAKRAAKKQGNTSISALEVFLVGAIAKLGATVTTYPLLVVKSRLQAKQEIGGNNSLRYSVCRPISKAINAGTFDAVLKMIRYEGITGFYKGMSTKIVQSVFAASVLFMIKEELVKAFIVLTNKSKKRGEVLTKIMDEVNSTTVDEPSLCYPFGMKCCRTPWNFS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03153 406 Gene3D Mitochondrial carrier domain 172 396 IPR023395 -
Vimu6g03153 406 Gene3D Mitochondrial carrier domain 1 171 IPR023395 -
Vimu6g03153 406 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 5 364 IPR044712 GO:0006862|GO:0055085
Vimu6g03153 406 Pfam Mitochondrial carrier protein 4 100 IPR018108 -
Vimu6g03153 406 Pfam Mitochondrial carrier protein 119 243 IPR018108 -
Vimu6g03153 406 Pfam Mitochondrial carrier protein 256 359 IPR018108 -
Vimu6g03153 406 SUPERFAMILY Mitochondrial carrier 5 354 IPR023395 -
Vimu6g03153 406 ProSiteProfiles Solute carrier (Solcar) repeat profile. 256 358 IPR018108 -
Vimu6g03153 406 ProSiteProfiles Solute carrier (Solcar) repeat profile. 119 241 IPR018108 -
Vimu6g03153 406 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 101 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03153 Vimu-Chr6 27893853 27898496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03153 64 369 Chloroplast and Mitochondria Gene Families AT1G25380 25.949 1.74e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03153 K13354 - gmx:100775304 597.816