Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03151 ATGGTCGCATTGTTCTCTCCTATCTTCTCACCCAAAGGCTGGCTCTTAGAGGACGAGCCATTCGGCTATAATAATAGTCATAACCTCTTATACAAAGATGATGCGTCTTCTGAGTACTCCTTTCCCTATAACTTTTATTCACCACAGAAACAGATTGAGCTTGAACTAGAAAGGTCTACTGCACCATCCTTTGACCCTGCCATGGTCAAGAAACTTAGCCACAATGCTAGCGAACGTGATCGTCGCAAGAAGGTCAACAACTTGGTTTCTTCACTTCGCTCACTTCTTCCAATGGCAGATCAAACGAAAAAAATGAGCATTCCTGCAACAGTTTCTAGAGTCTTGAAATACATACCTGAACTGCAACAGCAAGTGCAAGCACTAACAAAAAGAAAAGAGGAGCTTCTATGCAGAATTTCTCGGCAATTGCAAGGAGATGCAGTGAACAAAGAATCTCATAGGAAAATTTCCCACCACAACTCTTCTTTTGTTGTCTCAACAACTAGGCTTAACGAATGTGAAGCTGTAGTTCACATTTCATGTCATGATACCCACAAGGCTCCACTATCAGAGATCCTGCAGTGTTTAGAAAATGATGGTCTTTTTCTGCTAGATGCTTCTTCCTCAGAAACCTTTGGAGGAAGGTTCTTCTACAATTTGCATTTTCAGGTGGAGAAAACTAATAGATTAGAGCCCGAGATATTAACTGAGAAGCTTTTACCAATATATGAGAAGCAAAGGATTTTCTAA 750 0.4067 MVALFSPIFSPKGWLLEDEPFGYNNSHNLLYKDDASSEYSFPYNFYSPQKQIELELERSTAPSFDPAMVKKLSHNASERDRRKKVNNLVSSLRSLLPMADQTKKMSIPATVSRVLKYIPELQQQVQALTKRKEELLCRISRQLQGDAVNKESHRKISHHNSSFVVSTTRLNECEAVVHISCHDTHKAPLSEILQCLENDGLFLLDASSSETFGGRFFYNLHFQVEKTNRLEPEILTEKLLPIYEKQRIF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03151 249 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
Vimu6g03151 249 CDD bHLH_AtORG2_like 70 143 - -
Vimu6g03151 249 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 68 238 - -
Vimu6g03151 249 Coils Coil 118 138 - -
Vimu6g03151 249 SMART finulus 75 127 IPR011598 GO:0046983
Vimu6g03151 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 70 140 IPR036638 GO:0046983
Vimu6g03151 249 FunFam Transcription factor ORG2 65 150 - -
Vimu6g03151 249 Gene3D - 66 159 IPR036638 GO:0046983
Vimu6g03151 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03151 1 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 41.600 7.39e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g03151 HLH 4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03151 - - gmx:100803424 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03151 6 27861143 27863249 Vimu6g03151 6 27861143 27863249 ECH