Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03144 ATGAAGGTTGAAATTGAAGGCAGCCAGAGTGACTCTGCAGAATCTCAGGGAGTGTCTGGAACAGATGAATCTGTTTCCAGCCAATCAGAAAATAGAAGACTGGAATCCAAGAAGAAACTGAAGAAAGTGAGGTCAATAAGGCTTGTAAGATTGCCAAGCAAGAGATCATCCACTAGAGGGAGACCCCAATATGATCATCTCTCCATTCTCTCATCAGTTAGCACAGAAAATTTAGAGGGGGTAACACCACTTGATATGGCAGATGCATCACCCCATTACATGAAGGGTACCAGCAGTTCTCACGCAAAGGATAGTGTTCAGAATACAGAAAGACTATTGTTCACTAAGAAGACTTTGGGAAGAATGTCTACTTTGAAACTGAAGAGGAGTCTGACCAGAAAGGTATCTGGAAGGACCGAACCAAAGAGGAAAGTGAAGTCTTCTAGATCAATCATGCTTGTAACTGTCAAGGGCCAAAAGTCATCTGAATCTAGTTATGGCAGTGGTGCAAGTGATGCTGCTGATAACAAAACCCAGAGAGTCATTACCAGAAGATTAAGCTTTAAGCCTGTGAGGATCTTGGCAAAGATTCCCACTTTCAAATCAAAGAATTCTTCCATGGAGAGTGGCCAATCCCCAGACACAAGCTTGCTTAGAGCCACTTGCTCTTCTGCTCTGAAGGATTCCCATTTTCCTGACCACATTGGCTTCCCTCAAGAGGAAAGTGACTCTGAAAGAGTAGCAGCTGTTGCCAAGGTTTGTCCATATTCTTACTGCTCACTTCATGGTCACCGCCATGGGAATCTGCCTCCACTGAAGCGCTTTGTGTCAATGAGGAGGCGCAAGTTGAAGAGCCAGAAGCCAACGAAAATGGATAATCAACCTGTTACTAGATCAAATCAGTTTGGTAATGCAAAGAAAGGTACTCGTAAAACTCAAACTGTCCACAGTGAAGATGACAAATCTCATTTTCAGAACAAGAAAAAGCTTGCAAGGGACTCGAGTATTAGGCCTCATGATACTCCAGAATTCACAGTTACTGAAAGTGTGGAACCAGTATCAACAGATGGAGTTCAGTTTTCTGCTCCTGATATTGAGATGTTGGAGGGAGAAGTAACCAACACAGGCAAAAATATGGAGCCAGACCATGAAGTACTTGAGGTGAGTTCTGTACCGAAAGAGTCTACACATGCTAGCACTACTGATCTGGCATGTGGAATGCAGGAAAGAGATAAAAAGCACATCAACATGTGGCACTTGGTGTACAAACATGCTGTACTAAGTAACACAGGGAAATGTGAAAACAAGCAGCCCTTTGATGGAGGGGACAAGGAAGGAAGAGAGCAAGGTTTCCTTACGACTAATGAAGTAAACAACTCTGATTGTAGAGAAGATTGTGATACAGACCAGGATATGGATGATGAAAATAAGAATGTAATTGAGCTGGTGCAGAAAGCGTTTGATGAAATTCTTCTCCCAGAACCTGAAGAACTCTTTTCTGATGATAATTCCAAATCTGAAGGCGCTTATTCAGATGAGGTACTCTTAGAAAAAAACGATGGCCAGACAGAATGGGAAACCTCAGAATCCACAGAATCTCCAATAGCACAGAGGATGGAGACCAAATCTGATCAAAGAGCACCGAAAAGCTGGAGCAATCTGAAAAAGTTAATCCTGTGGAAAAGGTTTGTAAAAGCATTGGAGAAGGTGAGAAATATCCATCCTCAAAGACCAAGACGTTTTCCTTCTGATGCTAACTTTGAAATGGAAAAAGTTTTTCTCAAGCACCAAACAGCAGAAGAGAAAAAGCATGCTGAGGAATGGATGCTTGACTATGCACTTCAAAAGGTTATTTCTAAACTTGCACCTGCTCAAAGACGAAGAGTTACACTTTTAGTAGAAGCTTTTGAAACAGTTCAGCCATTTCAAGATGTCGAAAATAGTACACGGCTTTCCTTAACAACGGAGCATCAATCAAATCTAATTCAATCCCTTGAGAATTCCTCAAATCATAGCAAGGAAGAAGCATCACTTTCTCATAAGAGTACCATGGAACTGGCTGTTAACACTGGTGATGATCCAATGATAGAAATGCACAGTCCTATTATGCTTAAAGAAAGATGTGTTGACTATACTGAGACCGAGGCAGTCAATAATATGCCTGTATTTAGAGATATTGAAGAAGACTTGAATGGAAAGCAATCTTTACCCAGAAGTTATGATAATGAGAAGTTATCAAGTGACAATGATAATATTTTTCTTGGAGAGATCAAAGATACCAGATCAAGTTCCTTAAATAAGCCAACTGAATTTACAAGCAGCCATGTGGAGGATTCAACCAATGCAGTAGTCAATGATGTTTCAGAAGACTTGCTATCCAGTTTGAATACAGAAAATCAACATATCAAATCTGAGTCACCTGGAAGAGATGTCGAAACCAAGAATCTGATTGGTGATAATGGGGAAAAGCTTTCCATGTCTAAAAGTTTAATAGTAGAAGGTCTAGTTAGATCACTCAGATCTAACTTGATTGGTTCAGGAGCACCTGAGAAGCTATTAGATGAATCATCAGCTGATGGAAAAGAAGGAACTGAGAAAGTTAAGTTGGAAACCGAGACTGTTGAAGAGTTCCCTACAAAGGAACAATCTAAAGTACCTAAAAGTGCTTCTGTTGAACCTGAGACCCCTGTGGAGAAACAGAACAACACAGGATTGTGGTTCTTGGTGTATAAGCACATGGTATCAAATATGGCTGAAGGCAATTCCAAGTCACTGATTGATGGTGAAGATGAGAAAGAGTCAGCATTTGATGGAAGCACAACACGAGGATCTTCCATCTCTTACGAAGGCACGGCTGTGAGTAATCAAGAGATGCAATTCAAGGACCATGCTGCAGCTGATCCAGAAGTTGCACTTCAACAGATAGAAGCCATCAAGATGGTAGAAGAAGCGATTGATTCAATTCTTCCAGATGATCAGGATGAGTTAGCAGACAAGGAGTCACTCACTGGCAGCACAATATCAGACAACTCCAAACAATCTGACAGAACTGAAAGAGTGTACAGTGAAGACCTGAACCAAAAAGAAGAAAAGATGGAATCTGGGAATGAAATACTCCAAGAACAGCAAAAAGAATCAGCAGCACTAAAGGAACAAGGCAAAACAAACCAGCCATTGTCTAGAAGCTGGAGCAATCTTAAAAAAGTGATTCTTCTTAGGAGATTCATCAAGTCATTGGAAAAAGTAAGGAAATTCAATCCAAGAGGCCCCAGATATCTACCTCTAGAGCCTGATTCAGAAGCTGAAAAAGTTAACTTAAGGCATCAAGACATGGAAGAAAGAAAAGGCACTGAAGAATGGATGCTTGATTATGCACTTCGACAGGTTGTTTCCAAATTAACCCCGGCTAGGAAAAGAAAAGTGGAGCTGCTGGTGGAAGCTTTTGAAACAGTCATGCCAACCATAACAAAATGA 3474 0.4096 MKVEIEGSQSDSAESQGVSGTDESVSSQSENRRLESKKKLKKVRSIRLVRLPSKRSSTRGRPQYDHLSILSSVSTENLEGVTPLDMADASPHYMKGTSSSHAKDSVQNTERLLFTKKTLGRMSTLKLKRSLTRKVSGRTEPKRKVKSSRSIMLVTVKGQKSSESSYGSGASDAADNKTQRVITRRLSFKPVRILAKIPTFKSKNSSMESGQSPDTSLLRATCSSALKDSHFPDHIGFPQEESDSERVAAVAKVCPYSYCSLHGHRHGNLPPLKRFVSMRRRKLKSQKPTKMDNQPVTRSNQFGNAKKGTRKTQTVHSEDDKSHFQNKKKLARDSSIRPHDTPEFTVTESVEPVSTDGVQFSAPDIEMLEGEVTNTGKNMEPDHEVLEVSSVPKESTHASTTDLACGMQERDKKHINMWHLVYKHAVLSNTGKCENKQPFDGGDKEGREQGFLTTNEVNNSDCREDCDTDQDMDDENKNVIELVQKAFDEILLPEPEELFSDDNSKSEGAYSDEVLLEKNDGQTEWETSESTESPIAQRMETKSDQRAPKSWSNLKKLILWKRFVKALEKVRNIHPQRPRRFPSDANFEMEKVFLKHQTAEEKKHAEEWMLDYALQKVISKLAPAQRRRVTLLVEAFETVQPFQDVENSTRLSLTTEHQSNLIQSLENSSNHSKEEASLSHKSTMELAVNTGDDPMIEMHSPIMLKERCVDYTETEAVNNMPVFRDIEEDLNGKQSLPRSYDNEKLSSDNDNIFLGEIKDTRSSSLNKPTEFTSSHVEDSTNAVVNDVSEDLLSSLNTENQHIKSESPGRDVETKNLIGDNGEKLSMSKSLIVEGLVRSLRSNLIGSGAPEKLLDESSADGKEGTEKVKLETETVEEFPTKEQSKVPKSASVEPETPVEKQNNTGLWFLVYKHMVSNMAEGNSKSLIDGEDEKESAFDGSTTRGSSISYEGTAVSNQEMQFKDHAAADPEVALQQIEAIKMVEEAIDSILPDDQDELADKESLTGSTISDNSKQSDRTERVYSEDLNQKEEKMESGNEILQEQQKESAALKEQGKTNQPLSRSWSNLKKVILLRRFIKSLEKVRKFNPRGPRYLPLEPDSEAEKVNLRHQDMEERKGTEEWMLDYALRQVVSKLTPARKRKVELLVEAFETVMPTITK 1157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 656 672 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 130 149 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 282 360 - -
Vimu6g03144 1157 Coils Coil 1022 1052 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 1 64 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 656 680 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 133 147 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 289 310 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 922 944 - -
Vimu6g03144 1157 SMART CaM_binding_2 1039 1153 IPR012417 GO:0005516
Vimu6g03144 1157 SMART CaM_binding_2 527 641 IPR012417 GO:0005516
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 311 339 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 1012 1038 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 1039 1059 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 526 547 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 847 897 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 156 177 - -
Vimu6g03144 1157 Pfam Plant calmodulin-binding domain 537 640 IPR012417 GO:0005516
Vimu6g03144 1157 Pfam Plant calmodulin-binding domain 1052 1153 IPR012417 GO:0005516
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 883 897 - -
Vimu6g03144 1157 PANTHER CALMODULIN-BINDING PROTEIN-RELATED 329 651 IPR044681 GO:0005516
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 8 27 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 854 882 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 86 106 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 518 547 - -
Vimu6g03144 1157 MobiDBLite consensus disorder prediction 997 1059 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03144 Vimu-Chr6 27748840 27752428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03144 417 642 Calmodulin-binding Proteins AT5G04020 31.837 1.25e-18 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03144 - - gmx:100804484 1608.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03144 6 27748840 27752428 Vimu6g03144 6 27748840 27752428 ECH