Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03138 ATGACTGATACAATTCACTCAACTAGCTGGCTTGAGTGGAAGAGCACTAGTTCTGCTCTTAACACCTTATTCTATATAGAGTATAATAATGTTGAACCTGGTGCTGAATCCACCAAAAGAGTCACATGGGAGGGATTCAAGGTGATCACGGATGCTGCTGAGGCTGAACCTTCTACCCCAAGACAAATATATGTTGACGAACAAGACTTGGCAGGTTTGAGCTATGATATGGTTATAGTTTCAGAGGGTAGTGGTAATTTCACTACAATATCTAAAGCCATAGAAGTTGCTCTTGACGAAAAAGACTTGGCAATTTTGAGCTATGATATGGTCGCATTTTTAGACAGTAGTGGTAATTTCACTACAATATCTGAAGTTATAAAAGTTGCTCCTCCAAAAATTGTTCAAATTCGGCCAAGTTGGGTACAGTCAACGCTCGGTCAAGTTAGTCCCAACCGAAATTCTACTGAGTCGACCCTTGTCGAAAATCGGCCGAATTCGAAAAGTCAGCCCCGGTCGAAACAACCAAAATTTGTTCGACTTCGGCGAAGTCGGGCACAGTCAAAACCCGATCAATGTCTTACTGAAGGCACAATAGATTTTATCTTTGGGGACATGACACACGTGGTGCTACAAGACTGTGACATCCAAGAGAATGTTATAATTGTGCAAGGAAGACAAGTTAAGAATGGCTCTAATGGTAGTGTAATCCAAAACTGTAGGATTGGTACCACTTTTGAGTTTGACGTCATGAAACCGAATTTCCAAACATATCTATGGAATACTTGTTCTACTCTTAACACCCTATTTTGTAGAGAGTATAATAATGTTGGACCTGATGCTGAAACCTCCAAAAGAGTCACATGA 867 0.406 MTDTIHSTSWLEWKSTSSALNTLFYIEYNNVEPGAESTKRVTWEGFKVITDAAEAEPSTPRQIYVDEQDLAGLSYDMVIVSEGSGNFTTISKAIEVALDEKDLAILSYDMVAFLDSSGNFTTISEVIKVAPPKIVQIRPSWVQSTLGQVSPNRNSTESTLVENRPNSKSQPRSKQPKFVRLRRSRAQSKPDQCLTEGTIDFIFGDMTHVVLQDCDIQENVIIVQGRQVKNGSNGSVIQNCRIGTTFEFDVMKPNFQTYLWNTCSTLNTLFCREYNNVGPDAETSKRVT 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03138 288 Gene3D - 187 288 IPR012334 -
Vimu6g03138 288 Gene3D - 1 77 IPR012334 -
Vimu6g03138 288 SUPERFAMILY Pectin lyase-like 1 60 IPR011050 -
Vimu6g03138 288 Pfam Pectinesterase 192 259 IPR000070 GO:0030599|GO:0042545
Vimu6g03138 288 Pfam Pectinesterase 1 62 IPR000070 GO:0030599|GO:0042545
Vimu6g03138 288 MobiDBLite consensus disorder prediction 146 174 - -
Vimu6g03138 288 SUPERFAMILY Pectin lyase-like 192 288 IPR011050 -
Vimu6g03138 288 PANTHER PECTINESTERASE 192 288 - -
Vimu6g03138 288 MobiDBLite consensus disorder prediction 146 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03138 Vimu-Chr6 27720261 27724994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03138 1 63 Carbohydrate Esterase AT3G14310 50.794 3.29e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03138 K01051 - gmx:100776623 84.3445