Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03132 ATGCTCGGTGTCATTGTGTGTGCTCGGTGTGAGAAAGAAGAGGTCACTGTGTGTGCTCGGTGTCATTCCTTGAGAAACTATGGCCAGGTGAAGAACCAGACGGTGGAGAATTTAATACCTGATTTTGATTTCAATAGGTTGATCTCGACGCGGCTGATGAACCCTTCTGGAAGTGGCAGTGCTACTGTTGTTGTAATGGTTGTGGACTGTGTTGATTTTGATGGTTCATTCCCTAGGATTGCTGTGAAATCCTTGTTTCAAGCATTGGAAAGAATACAGGACAACTCCAAGCGGGCCAAGAAGCTGCCGAAGCTTGTTCTTGTGGCAACAAAGGTTGATCTACTTCCCTCCCAGGTTTTGTCTAGCAGGAAATACCGAACCCTACTGGTAAAATCCACTCGTGTTGGAAATTCAGGAAAGGTTATAGCCGCAATCACATACCAAATCATCCCTGCAGATACAGAATTTGCAGAGGTCCCACTTGCAGCTGTCAATGCAATCCATCAACGAAAGGGTTTTGGTCATTTATTGGTTCTGGAGCTACGGAAAAGACTTCAAAGTGTTGGCATTCGTTCTATTTTATGCTGGGGAGACAAAGAATCAGAAGGGTTTTGGCTTAAACAGGGTTTTGTAGAAATAGCACAGGTGGATACCAAAGGAAGGGCCCGTAGGTTACCTGTAAAAGCTGATATTCAGAAATCATTATGCTTTCTTGGTGGTTCAACTCTCATGGTTTGCCACGTAATGAAAGAATGCTTAGCCGATGAGGATAACACTACGAAGTGTCTCCCTTCACAGTTTCATCAGAATCCCTTTACACCTGCCATTGCTGAAGATGAGCAGCTGAAGATTTCAGGATCTGACAGTCGTAACCCTAAGAAATTCTGTAGTAGTATTGCTCCATTTGCCCAAGTAAACGATGATCGACAGGCCACTGGTTCGGAAAGTTCACAGGATGGAGTTGGTGCTAATGTGAATTATTGTTCTCAATCTACAAAAGCTGCAAAGAGGACCTGGGAAGCCTCTTTATCCTCGTTGAAGTCAAAAAGAGTGAAGGGGAGCCAGCTGGTTGACAATCAATCAGGTTCTAGCTGCGGTTTTATCTTAGAGACTGATGAGGCCAATCCCTGTTTTGTAGAGGCCGTCTACGATCCTTCGATTACAGATGGTTCTGAAAAATATGAACTGCTTCACATACTGAACGATACGGATTATTCGCTGAAGTACAAATGTGATTTAAAGAGTGCAGTTTTACGAGCAAAAGCTAGCTCTCATACATTGTTCAAGGGATATAATATATGTATTGCAGCTCATGTTCAAACTCCCGCTAAAACATTGTCTGCAATTGTCATGTCCGCAGGTGGTAATGTAATTAGTAGAGTGGAGAAAGTAAAAGAAACATCAACAACAATCTTTGTGACGGGCGAAGAAGACACGGAAGAAGCAATGGTAGCCGCAAAGAAAGGGATCCGAACTTTCAGTTGCGATTGGTTTATGAACTGTGTCATGAGACAAGAACTTGACTTGGAAGCCCCCCAGTTTGCTGAGACCTTATAA 1557 0.4342 MLGVIVCARCEKEEVTVCARCHSLRNYGQVKNQTVENLIPDFDFNRLISTRLMNPSGSGSATVVVMVVDCVDFDGSFPRIAVKSLFQALERIQDNSKRAKKLPKLVLVATKVDLLPSQVLSSRKYRTLLVKSTRVGNSGKVIAAITYQIIPADTEFAEVPLAAVNAIHQRKGFGHLLVLELRKRLQSVGIRSILCWGDKESEGFWLKQGFVEIAQVDTKGRARRLPVKADIQKSLCFLGGSTLMVCHVMKECLADEDNTTKCLPSQFHQNPFTPAIAEDEQLKISGSDSRNPKKFCSSIAPFAQVNDDRQATGSESSQDGVGANVNYCSQSTKAAKRTWEASLSSLKSKRVKGSQLVDNQSGSSCGFILETDEANPCFVEAVYDPSITDGSEKYELLHILNDTDYSLKYKCDLKSAVLRAKASSHTLFKGYNICIAAHVQTPAKTLSAIVMSAGGNVISRVEKVKETSTTIFVTGEEDTEEAMVAAKKGIRTFSCDWFMNCVMRQELDLEAPQFAETL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03132 518 CDD NAT_SF 137 196 - -
Vimu6g03132 518 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 118 247 - -
Vimu6g03132 518 Pfam Acetyltransferase (GNAT) family 137 210 IPR000182 GO:0016747
Vimu6g03132 518 ProSiteProfiles BRCT domain profile. 423 507 IPR001357 -
Vimu6g03132 518 Gene3D BRCT domain 424 517 IPR036420 -
Vimu6g03132 518 Pfam BRCA1 C Terminus (BRCT) domain 425 502 IPR001357 -
Vimu6g03132 518 Gene3D - 93 232 - -
Vimu6g03132 518 SUPERFAMILY BRCT domain 427 508 IPR036420 -
Vimu6g03132 518 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 138 217 IPR016181 -
Vimu6g03132 518 CDD BRCT_PAXIP1_rpt6_like 427 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03132 Vimu-Chr6 27684889 27689902 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vimu6g03132 BRCT 8.2e-05 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03132 - - pvu:PHAVU_001G128100g 458.759