Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03128 ATGGCATCGGTGCGTGAAGCTCCGTCGTGGAAATTCCACGTGTTTCTCAGCTTCAGAGGAGAAGACACACGCAACGGTTTTACGGACCACCTCTACGCTGCGTTCAGGGGACGTGGCTTTGCCGTTTTCAGAGACGACGAAGAGCTGGAGAGAGGAGAAGTCATCTCGGACGCGCTTCTCAAGGCGATTGACGAGTCTCTGTGTTCCGTGGTGGTTCTCTCGCCGCACTACGCCTCTTCGCGGTGGTGCTTGGACGAGCTCCTCAGGATACTGGAATCGCGAGCGAATTTCGATCGCAACGTTCTGCCGATCTTCTACAACGTGGATCCAGCAGACGTAAGGCATCAACGAGGAACTTTCGACGAAGCTTTTGCGAAGCATGTAGAGAGGTTTGGGAGCGATGAGGTTCGGATGTGGAGACAAGCGTTGAAGGACGTCGCGGCTTTGTCTGGCTGGACCTCTAAGGATAAGCGTGAAACAGAACTCATTGAAGAAATTGTTGCAGATGTGTGGGAAAAGTTACAAACTAAATTGCCATCCTATGATGATGAACTGATTGGAATTGATTCTAGGATAAACAGCATTTATGCACTTTTAAGAATGGACTCACTGGAAGTTCGCTTTATGAGCATATGGGGCATGGGTGGTATTGGAAAGACAACATTAGCCAGTTCTGATATCCAAGTAGAAAATTTAGCTGGGAAGCCAGAATGGTTTGGTCAAGGGAGTAGAGTCTTGAATAATTATGAATCCCTTCAACTTTTTTGCCAAAAAGCGTTTAGAGGAGAAAAGCCTGAACAAGATTACTTAGAATTGTCTACATCTGTGGTTCAATATGCTGGAGGTGTTCCTTTGGCACTCAAAGTGTTGGGTTCATTTCTCTGTGGAAGAAGTGTTTCCGTATGGGAAGACGCTTTGAAAATGTTAAGGAAGGATGCACAAAATGATATTTGCAAGACTCTAAGAATAAGTTATGATGGATTACGAGATAATGAGAAGGCTATATTTCTAGATATTGCTTGTTTTTTCAAAGGAAACACCAAAGATGATGTAACGCGAATATTGGAAAATTGTGATTTCAATCCACTGATTGGTATTGAAGTTCTAATTGAAAAGTCATTAGTAACTTATGATGGATTGCATTTGGGGATGCACGATTTGCTTCAAGAAATGGGTAGGAATATTGTTTTCCAAGAATCTCCTAATGATGCCAGCAAGAGGAGTAGGCTGTGGACACTCAAGGACATTGATCAAGTATTGAGAAATAATAATGGAACCGAATCCATTCAAGCTATAGTTTTAAATTTGCCTGAGCCTTATGAAGCATTTTGGAATCCGGACGCTTTTTCAAAGATGAGTAATCTTAGATTGCTCATGATATTGAATAAATTGCAACTTCCGCTTGGTCTCAAATGTCTTCCCAGTGGATTAAAAGTTCTTGTATGGAAGGAATATCCTCTTGAATCCCTGCCTGTCGGACCCCAACTCGATGAACTTGTTGAGCTTCATATGTGTCAAAGCAAAATAAAGCACCTTTGGGGGGGAACAAAGTTTCTGGAAAATTTGAAGATCATCAATTTGAGAAATTGCAATAATCTACACAGAACTCCAGATTTCACTGGAATTCCAAATCTTGAAAAATTGGATCTTGAAGGCTGTGTAAACCTAGTTGAGATTCATGCATCTCTTGGACTTCTTAAAAAGCTTTCGTACCTGACATTTGAAGGTTGCAAAAATCTCAAAATCCTTCCAATAAAGCTGTTATTAGATTCTTTAAAAAGTCTAGTTCTTTCAGGCTGCTCCGCAGTTAGAAAGCTTCCTGAGTTTGGAGAAAGTATGAAAAGTCTATCCGTGCTTGCTTTAGAGGAGACTTCCATAGCTGAACTACCCGTGTCTGTGGGTCACTTGACAGGTCTTACTAACTTGCTTTTAGAGGGTTGCAAAAATATTGTTTGCCTTCCAAATACCATTTCTAATTTGAAATCTCTCAAAAGGCTCAATATCTCTGGTTGTTCAAAAATTTCTAAACTGCCTGATAATTTGAATGAAAATGAGGCTTTGGAATCTTTAGATGCAAGCGAAACTGCTATTAGGGAAGTGCCTTCATCCATTGTTCTTCTAAAAAATCTCAGACTGCTTTCACTTCGTGGGTGCAAAGACTTAGCATCAAACTCATGGAGCTCACTTCTTCTCCCTTTTGAGAACATTCTCCGGTTTAATAGTCATCCAACACCAAAGAGATTGATCTTGCCTTCTTTTTCTAGTCTATCCTCATTGAGGAAACTGGACTTGAGTTATTGCAATCTCCATGATGGATCAATTCCTGAAGATCTTGGCTGCTTATCATCATTGGTAACATTAGATCTAAGTGGAAACAATTTTGTATGCTTTCCTGGTAGCATCTCTGAACTTTTGAAGCTAGAAAGACTATTATTGAAGTGCTGCCCGAGGCTGGAGTCATTTCCTAAGCTGCCACCAGAAGTACATTATGTAAATGCAAGTGATTGTCGTTCAATGAAACCTTTATCAGATCCGCAACAGATATGGGGTCATTTGGCATCATTTGCCTTTGATAAGTTTCAAGATGCCAGTAACTTTAAAACCTTATTGGTAAGTCCAGGAAACGAAATTCCATCATCTTTTTTCTGTCAAAAGCATCTCAACCAGGTCCAAGACATAGAATACTTGAAAGAAAACTACATCTGGGCCGACTCTACTGTGTCAATACCGATGGACTTAGCTCAACTTCGTCACCGGTATCATAGAAGTGAATGGTGGGGAATTTTGGTTTGTCTGGTTGTAGAAGATGTGGAGTCTTCACCTTCACAGGAATATCGCATTGGTTGGATTTCAAAGGTTCCTAGTTTCAAAAATATTTTGCAGCAGCTGTGTCACAAGACAGAGCAGGGGTTCATCTCTGGAATCCATAATCATAAATATCCTCACCTGTTGATTTTATATATTCCGGTTCATAGGGCTCGCTGGTTTTATGTTCATGACAAGTTTCAATTAATATTTTATTGTTCTAGTCTCAAGAGCAAATTAGTGATAAAGAAATGTGGATGGCACATATTAAGTAAGGAAGATGCTGAAAACTGGCGCACAAAACTGTCTGAATGCAACACTAATTCCACCAATCAATGTGTTGAAAATCCAAGGAACTGTCGTCTATCTCCACATTTTTCATCCTGGAGATGGATATCCCGTCTCAAGGTTCCACAACACTGCAAGACTTTCCTCTTGGCCATCCTCTGTGATCGCTTGCCTGCTAACGAAAGGTGCTCATTCTGCTGCTTGGAAGGGACTGTCATCCATGTTTTACGAGACTGTACCAGAGCTACTGCCATATGGGTTCAAATGGTTCCTCCTGAGGTGTGTGATGAGTTTTTTTCAACATCTCTTCATGACTGGATGCACAGGTTCCTTCTGAAGCTCTGGTTTCCCGACAGGGACTATTATACTGACTGTTTGAGGTTTACCATCACGATCTGGCTACTTTGGAAGGATAGAAATAGTTCCATCTTCAAGCGAAATTCTCCAACAGATAATGATGGGTTGTATTCAATGATTCAATCTCTAGTAAAAGAATATTCAATTCTTTTGCATCTGAAAGGGGAAGAGGGTACTTCTGCTGCGAATTCTCTCTCCCAGAACTCACGTCTAAAACTTTTTGTCAGGCTGAACGTTGATGGCTGTTGTAATGGCAATCCTGGAAATGCTGGTTATGGGGGTCTCTTTCGTGACGTAGAGGGGAAGTGGCTTGGTGGGTTTTATGGATCTCTTGGCCTTGCAACGAATGTGAAAGCTGAGCTTTATGCCATTTGTCAGGGTTTGATCGCAGCTTGGGATTTGGGTTACCGAACCGTGCTGGTTGAAACTGATTCATTAGAAGCAATAAATCTCATTAAGGAGGCCAATATTGAGGATTCTGCCTATGGTGGTTTGCTTGCTGACATACGTTCCCTCATGCAAAGAAATTGGTCCTTAGACTTGATCCATTCTCTTAGACAAGATAATGCATGTGCAGACATGTTATCAAAGCTGGGAACTGAGCAGCATGAGGTCTATTGCTTCCTGGCCCATCCACCTCAGCAGCTTCAACTGGCATTGGCGGCTGATGCCCTGCAAGTTCAACTTCCTTGCCTCTAG 4149 0.4165 MASVREAPSWKFHVFLSFRGEDTRNGFTDHLYAAFRGRGFAVFRDDEELERGEVISDALLKAIDESLCSVVVLSPHYASSRWCLDELLRILESRANFDRNVLPIFYNVDPADVRHQRGTFDEAFAKHVERFGSDEVRMWRQALKDVAALSGWTSKDKRETELIEEIVADVWEKLQTKLPSYDDELIGIDSRINSIYALLRMDSLEVRFMSIWGMGGIGKTTLASSDIQVENLAGKPEWFGQGSRVLNNYESLQLFCQKAFRGEKPEQDYLELSTSVVQYAGGVPLALKVLGSFLCGRSVSVWEDALKMLRKDAQNDICKTLRISYDGLRDNEKAIFLDIACFFKGNTKDDVTRILENCDFNPLIGIEVLIEKSLVTYDGLHLGMHDLLQEMGRNIVFQESPNDASKRSRLWTLKDIDQVLRNNNGTESIQAIVLNLPEPYEAFWNPDAFSKMSNLRLLMILNKLQLPLGLKCLPSGLKVLVWKEYPLESLPVGPQLDELVELHMCQSKIKHLWGGTKFLENLKIINLRNCNNLHRTPDFTGIPNLEKLDLEGCVNLVEIHASLGLLKKLSYLTFEGCKNLKILPIKLLLDSLKSLVLSGCSAVRKLPEFGESMKSLSVLALEETSIAELPVSVGHLTGLTNLLLEGCKNIVCLPNTISNLKSLKRLNISGCSKISKLPDNLNENEALESLDASETAIREVPSSIVLLKNLRLLSLRGCKDLASNSWSSLLLPFENILRFNSHPTPKRLILPSFSSLSSLRKLDLSYCNLHDGSIPEDLGCLSSLVTLDLSGNNFVCFPGSISELLKLERLLLKCCPRLESFPKLPPEVHYVNASDCRSMKPLSDPQQIWGHLASFAFDKFQDASNFKTLLVSPGNEIPSSFFCQKHLNQVQDIEYLKENYIWADSTVSIPMDLAQLRHRYHRSEWWGILVCLVVEDVESSPSQEYRIGWISKVPSFKNILQQLCHKTEQGFISGIHNHKYPHLLILYIPVHRARWFYVHDKFQLIFYCSSLKSKLVIKKCGWHILSKEDAENWRTKLSECNTNSTNQCVENPRNCRLSPHFSSWRWISRLKVPQHCKTFLLAILCDRLPANERCSFCCLEGTVIHVLRDCTRATAIWVQMVPPEVCDEFFSTSLHDWMHRFLLKLWFPDRDYYTDCLRFTITIWLLWKDRNSSIFKRNSPTDNDGLYSMIQSLVKEYSILLHLKGEEGTSAANSLSQNSRLKLFVRLNVDGCCNGNPGNAGYGGLFRDVEGKWLGGFYGSLGLATNVKAELYAICQGLIAAWDLGYRTVLVETDSLEAINLIKEANIEDSAYGGLLADIRSLMQRNWSLDLIHSLRQDNACADMLSKLGTEQHEVYCFLAHPPQQLQLALAADALQVQLPCL 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03128 1382 Gene3D - 6 175 IPR035897 -
Vimu6g03128 1382 Gene3D - 176 237 IPR027417 -
Vimu6g03128 1382 Gene3D Ribonuclease Inhibitor 410 610 IPR032675 -
Vimu6g03128 1382 Gene3D Ribonuclease Inhibitor 611 875 IPR032675 -
Vimu6g03128 1382 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 615 725 IPR044974 GO:0006952
Vimu6g03128 1382 CDD RNase_H_like 1227 1347 IPR044730 -
Vimu6g03128 1382 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 152 IPR035897 -
Vimu6g03128 1382 SUPERFAMILY L domain-like 384 736 - -
Vimu6g03128 1382 SUPERFAMILY L domain-like 748 843 - -
Vimu6g03128 1382 Gene3D - 1224 1352 IPR036397 GO:0003676
Vimu6g03128 1382 ProSiteProfiles TIR domain profile. 10 174 IPR000157 GO:0007165
Vimu6g03128 1382 FunFam Disease resistance protein (TIR-NBS-LRR class) 247 329 - -
Vimu6g03128 1382 Gene3D - 245 329 IPR042197 -
Vimu6g03128 1382 Pfam NB-ARC domain 241 323 IPR002182 GO:0043531
Vimu6g03128 1382 SUPERFAMILY Ribonuclease H-like 1225 1353 IPR012337 -
Vimu6g03128 1382 SMART LRR_typ_2 660 684 IPR003591 -
Vimu6g03128 1382 SMART LRR_typ_2 781 804 IPR003591 -
Vimu6g03128 1382 SMART LRR_typ_2 613 636 IPR003591 -
Vimu6g03128 1382 SMART LRR_typ_2 756 780 IPR003591 -
Vimu6g03128 1382 Pfam TIR domain 11 181 IPR000157 GO:0007165
Vimu6g03128 1382 Pfam Reverse transcriptase-like 1228 1347 IPR002156 GO:0003676|GO:0004523
Vimu6g03128 1382 Pfam Leucine Rich Repeat 499 517 IPR011713 -
Vimu6g03128 1382 SMART till_3 11 149 IPR000157 GO:0007165
Vimu6g03128 1382 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 176 - -
Vimu6g03128 1382 PRINTS Disease resistance protein signature 463 477 - -
Vimu6g03128 1382 PRINTS Disease resistance protein signature 658 674 - -
Vimu6g03128 1382 PRINTS Disease resistance protein signature 208 223 - -
Vimu6g03128 1382 ProSiteProfiles RNase H type-1 domain profile. 1221 1351 IPR002156 GO:0003676|GO:0004523
Vimu6g03128 1382 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 339 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03128 Vimu-Chr6 27656863 27663434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03128 555 812 WRKY Transcription Factor Family AT4G12020 29.730 3.55e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03128 - - vvo:131622857 1584.7