Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03113 ATGGATCACCGACCGAAATCGAAGGATTCACTCCCTTACTCCACTCTTTTCAATCTCGAGTCTTTGGTGAACTTTCAACTTCCACAACACGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGGCAGCCAAGGTGGGGGGATTACGAATCACAGTAATGGGAATGTGCATGGAAGGGAGGCGAGTTTGTTGAAGAAGAGGAGGTGGTCTCTGAACCGTGACAGTGAGGATAGGAGCGGTTTTTATGAGACACACATGACAGAGGAGCGATATCGATCAATGTTGGGAGAGCATATTCAGAAATACAAGAGGAGGTTAAAGGATACAATAAGTAGTCCTGCCCAAAATCAAGCTGCTGTTGCACCTGGGAAAAGCAGCACAGGGTTGAAAGCTCGGAAGTCAGGGAATGAGCGCAGGGGAGGATTACATGCTGTGGAGACTACTTCAGAATGGATGAATGATTCGAGCTCCCAGAAACCAGGAAACTACCGTGAAGCAGATTTCACCCCACAATATGGCACTGCTGATAGGATTATGTATGAACCTGCATCTTTGGATATTGGGGATGGAATCATTTACAAGATTCCTCCAATCTATGATAAGTTGGCAGGAGCTCTGAACCTCCCAAGCTTCTCGGATATCCATGTTGATGATTTTTACTTAAAGGGCACCTTGGATTTGGGTTCATTGGCTGAGATGATGGCAGCTGATAAAAGATTTGGGAATAGAAACCGAGCTGGCATGGGTGAAGCATTACCGCAATATGAATCACTACAGGCACGGATGAAGGTCATGGGAGCTTCAAATTCTGCTCATAAATTCAGTCTGAAAGTGTCTGATGCTGATTTGAATTCCTCCATTCCAGAGGGGGCAGCGGGAAGCATAAGGCGATCTATTTTGTCCGAGGGTGGTGTATTGCAGGTTTATTATGTGAAAGTTTTGGAGAAAGGTGACACCTATGAGATCATTGAAAGAAGCCTACCTAAGAAACAAAAAGTGAAAAAAGATCCTGCCTTGATCGAGAAGGAGGAAACAGAACGATGTGGTAAGATTTGGGTAAATATTGTCAGAAGGGACATACCAAAGCATCATAGGAACTTCACTACTTTTCATCGAAAGCAGCTTATTGATGCCAAGAGAGTCTCAGAGATTTGTCAAAGAGAGGCATGTGTTGCTGTAAAGATTTTGTTGGTAGGCTATGTACATGGCACTTTGTCTACAGTAACTTATGTGGACCTTTTGCTCTTTCAGGTTAGAATGAAAGTTAGTAGATCCCTTAAATGGACAAGGGCTGCTGGAATGCGCACCCGGAAACTAGCTAGGGACATGCTGCTGTTCTGGAAACGAATAGATAAAGAGATGGCAGAAGTGAGGAAGAGGGAGGAAAAAGAAGCTGCAGAAGCTTTGAGGCGAGAACAGGAGCTTCGAGAGGCAAAGAGGCAACAACAAAGGCTTAATTTTCTTATACAACAAACTGAGCTGTACAGTCACTTTATGCAGAACAAGTCAAACTTGCTATCTTCAGAAACTTTACCCACTGTAGATGAAGATGCAAATGACCAAGATGCAATGATTGATGACTCTTCAGATGCTAAGCCTGATGACGAGGAAGATCCTGAAGAGGCTGAATTGAAGAAGGAAGCTTTGAAGGCTGCACAAGAAGCAGTTTTTAAGCAGAGAAGTTTGACAAGTGCTTTTGACACTGAATGCTTGAGGCTGCGTCAAGCTGGTGAAACAGATTCACTTCCACCAGATGTTGCTGGAGCGAGTAATATTGATTTGCAAACCCCCTCCACCATGCCAGTGGCATCCACAGTTCGGACACCTGAATTATTTAAAGGGGTTCTTAAAGAATATCAGCTAAAGGGTCTTCAGTGGCTTGTAAATTGTTACGAACAGGGTTTAAATGGTATTCTAGCAGATGAAATGGGACTTGGAAAGACTATTCAGGCCATGGCATTCTTGGCTCATTTAGCTGAGGAAAAAAACATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCAGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCGGAACTGAAAAGACTTCCATACTGGGGCGGACTCTCAGAACGGACAGTACTTAGGAAAAGTATTAACCCAAAGGATCTATACCGTAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTATTAGTATCTGATGAGAAGTATTTTCGTCGAGTGAAATGGCAATATATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTTCGACAAGTATAAGATGGAAGACACTTCTCAGTTTTAATTGTCGGAATCGCCTACTGCTGACTGGTACACCCATTCAGAATAACATGGCTGAGTTATGGGCTCTTCTTCACTTCATCATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCTAAAGGAATTGAGAACCACGCGGAACATGGAGGTACTTTGAATGAGCATCAGCTTAATCGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGGCGTGTTAAAAAGGATGTGGTTTCTGAGCTGACTAGAAAAACTGAGGTTACTGTTCACTGTAAACTCAGTTCTCGGCAACAGGCTTTTTATCAAGCAATTAAGAACAAGATCTCTCTTGCCGAATTGTTTGACAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCTGAGTTGTTTGAAAGGAGTGAGGGAAGCACATACCTCTACTTTGCAGAGATTCCGAATTCCCTTCCACCTCCTCCATTTGGGGAATTGGAGGATATTTATTATTCTGGTGGTCACAACCCCATATCATATGAGATGCCAAAACTTGTCTATGAAGAAATTGTACAAAGTTCAGAGATTTTTGGATCAGCTGTTGGTCGTGGTGTCTCCAGAGAATCTTTTCAGAAACATTTTAGTATTTTTAGACCAGAAAACGTTTTTCGATCTGTATTCTCAGAAGACACGTACAGTATAAGTGGAAACCTAGGTTTTACCCATTTGATGGATTTGTCTCCACAAGAGGTGATGTTTCTGGCTACTGCTTCTTTTGTGGAGCGACTATTATTTTCTATTACGAGATGGGAACGTAAATTCATTGATGAAGCTGTAGACTTTCTAACTGAGACCATAGATGATGACCCAGAATGTAGTTACCTTGAGAAAGAAAAAGTCAGAGCGGTTACAAGAATGTTATTGGTGCCAACGAGATCCGAGGCTCAGTTTCTGCAGGAAAGATTGCAGACTGGACCCAGCCATGCTCCTTTTGAGGCCTTGATTGTCCCACATGAAGATAGGCTGTTATCAAACGCCAGGCTTGTTCACTCTGCTTACACATATATCCCACAAAGTAGAGCTCCTCCTATTGGTCTTCACTGCTCAAATAGGAACTTCTACTATAAAATGATTGAAGAATTACATGATCCCACGGTTAAGAGGTTATTTGTGGGATTTGCACGTACATCTGATTATAATGGACCTAGAAAGCCAGATGCTCCTCACCATTTAATTCAAGAGATAGATTCTGAATTACCTGTTTCTCACCCTGCGCTTCAGTTAACACATAGCATTTTTGGAACTTCTCCTCCAATGCGCAATTTTGACCCTTCGAAGTTGCTCACTGACTCCGGAAAGCTCCAAACACTTGATATATTATTAAAACGGTTAAGAGCAGGAAATCATCGTGTACTCTTGTTTGCTCAGATGACCAAAATGTTGAATATTTTGGAGGACTACATGAACTATAGAAAATATAAGTATTTTAGACTTGATGGATCATCCACTATCCAAGATCGTAGAGACATGGTCAGAGACTTTCAGCATAGGAATGATATTTTTGTGTTCTTATTGAGTACAAGAGCTGGTGGGTTAGGTATCAACTTGACGGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGCCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCGAGTCAGAAAAGTACTGTGCAGAACCTTGTCATGACTGGTGGATCTGTCGGTGGTGATCTCTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTAGATGATGCTCAGTTGGAGCAGAAGTTAAAGGAGATCCCTCTCCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTATGAAAGGCATTAGGGTAAATGAAGACGGTGATGCATCACTGGAAGATCTAACAAGCTCTGCAGCTCAGGGTACTTCAGATTATGATGCTGCCGTGGATCCAGAGGGTTCAAAGTCCAGTAATAAAAAGAGAAAAGCTGCCTCGGATAAGCCGAGGCCAAAGAATTCTCAAAAGATGAGTGAATTTAGTACTGCATTCATGGACAGCGAATTGGATGATGTCGATCCAGTGGGTCAGAAACCCAAGAGACCGAAGAGGGTAAAGAAGAATGTGAACGTTGAAGATACTTTTACTGGGACTGCTTTCACTGTTCCAGAGCAGAGCCAATTTCCACCTCCACGTGATTTTAGTGCCGGTGGTTCTAAAGCAGAATCAGGGCAAGACAACTAA 4674 0.4223 MDHRPKSKDSLPYSTLFNLESLVNFQLPQHDDDFDYYGNSSQDESRGSQGGGITNHSNGNVHGREASLLKKRRWSLNRDSEDRSGFYETHMTEERYRSMLGEHIQKYKRRLKDTISSPAQNQAAVAPGKSSTGLKARKSGNERRGGLHAVETTSEWMNDSSSQKPGNYREADFTPQYGTADRIMYEPASLDIGDGIIYKIPPIYDKLAGALNLPSFSDIHVDDFYLKGTLDLGSLAEMMAADKRFGNRNRAGMGEALPQYESLQARMKVMGASNSAHKFSLKVSDADLNSSIPEGAAGSIRRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEETERCGKIWVNIVRRDIPKHHRNFTTFHRKQLIDAKRVSEICQREACVAVKILLVGYVHGTLSTVTYVDLLLFQVRMKVSRSLKWTRAAGMRTRKLARDMLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSETLPTVDEDANDQDAMIDDSSDAKPDDEEDPEEAELKKEALKAAQEAVFKQRSLTSAFDTECLRLRQAGETDSLPPDVAGASNIDLQTPSTMPVASTVRTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTRKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFAEIPNSLPPPPFGELEDIYYSGGHNPISYEMPKLVYEEIVQSSEIFGSAVGRGVSRESFQKHFSIFRPENVFRSVFSEDTYSISGNLGFTHLMDLSPQEVMFLATASFVERLLFSITRWERKFIDEAVDFLTETIDDDPECSYLEKEKVRAVTRMLLVPTRSEAQFLQERLQTGPSHAPFEALIVPHEDRLLSNARLVHSAYTYIPQSRAPPIGLHCSNRNFYYKMIEELHDPTVKRLFVGFARTSDYNGPRKPDAPHHLIQEIDSELPVSHPALQLTHSIFGTSPPMRNFDPSKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDAQLEQKLKEIPLQVKDKQKKKQPMKGIRVNEDGDASLEDLTSSAAQGTSDYDAAVDPEGSKSSNKKRKAASDKPRPKNSQKMSEFSTAFMDSELDDVDPVGQKPKRPKRVKKNVNVEDTFTGTAFTVPEQSQFPPPRDFSAGGSKAESGQDN 1557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03113 1557 MobiDBLite consensus disorder prediction 1521 1535 - -
Vimu6g03113 1557 MobiDBLite consensus disorder prediction 1419 1557 - -
Vimu6g03113 1557 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 633 804 IPR014001 -
Vimu6g03113 1557 MobiDBLite consensus disorder prediction 1464 1484 - -
Vimu6g03113 1557 Gene3D - 1203 1458 IPR027417 -
Vimu6g03113 1557 FunFam DNA helicase INO80-like protein 1207 1459 - -
Vimu6g03113 1557 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1239 1423 IPR001650 -
Vimu6g03113 1557 SMART helicmild6 1265 1348 IPR001650 -
Vimu6g03113 1557 MobiDBLite consensus disorder prediction 33 65 - -
Vimu6g03113 1557 MobiDBLite consensus disorder prediction 523 547 - -
Vimu6g03113 1557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 851 1418 IPR027417 -
Vimu6g03113 1557 CDD SF2_C_SNF 1227 1359 - -
Vimu6g03113 1557 Pfam Helicase conserved C-terminal domain 1239 1348 IPR001650 -
Vimu6g03113 1557 PANTHER HELICASE SRCAP-RELATED 88 556 - -
Vimu6g03113 1557 SMART ultradead3 617 812 IPR014001 -
Vimu6g03113 1557 Coils Coil 457 496 - -
Vimu6g03113 1557 ProSiteProfiles DBINO domain profile. 385 510 IPR020838 GO:0003677
Vimu6g03113 1557 Pfam SNF2-related domain 636 923 IPR000330 GO:0005524|GO:0140658
Vimu6g03113 1557 MobiDBLite consensus disorder prediction 153 169 - -
Vimu6g03113 1557 Gene3D - 595 873 IPR038718 -
Vimu6g03113 1557 MobiDBLite consensus disorder prediction 115 170 - -
Vimu6g03113 1557 MobiDBLite consensus disorder prediction 40 62 - -
Vimu6g03113 1557 MobiDBLite consensus disorder prediction 1419 1440 - -
Vimu6g03113 1557 Pfam DNA-binding domain 351 509 IPR020838 GO:0003677
Vimu6g03113 1557 FunFam Putative DNA helicase INO80 593 871 - -
Vimu6g03113 1557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 849 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03113 Vimu-Chr6 27465180 27475309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03113 642 931 RAD5 or RAD16-like Gene Family AT5G43530 28.869 1.07e-25 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu6g03113 SNF2_N 7.5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03113 K11665 - gmx:100780615 2667.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03113 6 27465180 27475309 Vimu6g03113 6 27465180 27475309 ECH