Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03104 ATGGAGAAGACTCTCCTCAAGGATTTCGAGCTCCAACACAAGAATCCCTCCGTCGAGGCTCTCCGCCGATGGAGATCCGCCGTCACTCTCGTCAAAAACCGCCGCCGCCGCTTCCGCATGGTCGCTGATCTCGACAAGCGCGACGAAGCTCAACAGATTAGGCAGGGAATCAAGGTTTTTCTTCCGCTCTCCTCCTCTGTTTCCTTATTACTATTATCGTTACTCTCTCTCTGTTTCTATGCTTATCCTTATCGTAACTGCCTCGGAATCGACCTTACCAATTTTAATACACCATATTTGGCTTACCCTGTCAGGAAAAAATTCGAATTGCTCTCTATGTTCAAAAGGCAGCATTACAATTTATCGATGCTAAACTGGTTTACTGTTGCAGCTGGTAATCGAGTTGAATACAAGCTACCGAGTGACGTGAGAGAGTCTGGTTTTTGTATTCATCCGGAGGAGATTGCTTCTATTGTTCGTGGCCACGATAACAAGATCTTAAATAATATTGGTGGAGTTGAAGCCATCGCAAGGAAACTGTCCGTTTCAGTGGATGGGGGTGTTAGTGAAGAGAGTATAAATAGACGACAACAGATTTATGGATTCAATCGTTTTACAGAAAAACCATCTAGATCGTTCCTGATGTTTGTGTGGGATGCACTGCAGGACTTAACTTTGATCATTCTCATTGTTTGTGCTGTAGTTTCTTTAGGTGTAGGGATAGCCACTGAAGGGTGGCCAAAGGGAACGTATGATGGTGTGGGCATCATACTCAGTATATTCTTAGTAGTCACTGTTACAGCTGTCAGTGATTACAAGCAATACCTGCAGTTCAGGGATTTGGACAAAGAGAAGAAAAAGATATTTGTTCAGGTCACTAGGGATGGGAAAAGGCAGAAGATCTCAATTTATGATATAGTAGTTGGTGATGTTGTTCATTTGTCAACTGGAGATCAAGTTCCAGCAGATGGACTTTTTATATCAGGATACTTTTTGCTTATTGATGAATCGAGTTTGTCAGGTGAGAGCGAACCAGTAAATGTAAATGAAGAAAAACCGTTTCTTCTTTCAGGAACCAAAGTGCAGGATGGTCAGGGGAAGATGATAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAAACTATTAACGAGGGAGGAGAGGATGAGACCCCGTTGCAGGTTAAGTTAAACGGAGTTGCTACTATCATTGGTAAAATTGGTTTGACATTTGCCATTCTGACATTTGTGGTATTGATCATAAGGTTTCTGGTTGAAAAAGCACAAAATGGTGAGTTTGCCAACTGGTCTACGGCTGATGCACTCAAGTTACTGGACTTCTTTGCTATTGCTGTAACCATAATAGTTGTTGCTGTTCCTGAAGGATTGCCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAAGGCACTTGTAAGACATCTTTCTGCTTGTGAGACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACCGGGACACTGACCACTAACCGAATGGTGGTTACTAAGACATGGATATGCGAAAAAGCAATGCAGATAACAGGTAACGAGAGTGCAGACGAACTGAAAACATGTACACCTGAAGGTGTTCAAAACATCCTTTTACAGGCTATATTTCAAAATACATCTGCTGAAGTAGTTAAGGATAAAGATGGAAAGAACACAATATTGGGGACCCCAACAGAATCGGCATTATTGGAATTTGGCTGCCTTTTAGGTGCTGACTTTGATGCCTATGCGCAGCGTAAAATGTACAAGATACTCAAAGTTGAGCCATTCAATTCAGTCCGAAAGAAAATGTCTGTGCTTGTGGGTCTTCCTGATGGAGGGGTCCGAGCATTCTGCAAAGGTGCATCAGAAATAATATTAAAGATGTGTAACAAAATTATTGATTGCAATGGGGAAGTAGTTGATCTTCCTGAAGAGCATGCAAATAATGTCTTAAGTATTATAAATGATTTTGCTTCCGAAGCTTTGAGAACTCTTTGTTTGGCCTTCAAAGATATAAACGAAATGCATGGGGAAGCCAACATTCCTGATAGTGGCTATACTCTAATAGCATTAGTAGGAATCAAGGATCCTGTACGCCCTGGAGTTAAGGAAGCTGTTCAAATTTGTAAAGCTGCTGGAATAACTATCCGCATGGTTACTGGTGATAACATACATACAGCAGAAGCTATAGCCAAAGAATGCGGTATACTTACTGAGGGTGGTGTAGCCATAGAAGGTCCAACGTTTCGTGACCTTTCTTCCGAGGAAATGATGGATACCATACCTAGGATCCAGGTGATGGCACGATCCTTACCGCTCGACAAGTATAAGTTGGTAAACAATTTGAGGAGTATGTTTGGTGATGTTGTTGCTGTTACTGGTGATGGAACTAATGATGCTCCAGCACTTCGTGAGGCAGACATTGGACTTGCAATGGGCATAGCAGGAACTGAGGTTGCAAAAGAAAACGCTGATGTCATTATCCTGGATGATAACTTCACGACTATTCTGAGTGTTGTCAAATGGGGACGTTCAGTATACATAAACATCCAAAAATTTGTGCAGTTTCAATTGACAGTTAATGTTGTTGCTCTGGTTATCAATTTCTTTTCTGCATGTATCACAGGATCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTGAACTTGATCATGGACACTCTTGGTGCATTAGCCCTAGCTACTGAACCTCCTAACGATGGTCTTTTGAAAAGACCTCCTGTTGCAAGGGGAGCAAACTTCATCACCAAACCTATGTGGAGGAATATCATTGGTCAAAGTATATACCAATTAATTATCCTTGCGATTCTTAATTTTGACGGGGAGAGGCTCCTCGGAATTACTGGTTCGGATGCAACAGAAGTTCTCAACACTCTGATATTCAACACCTTTGTATTTTGCCAGGTGTTCAATGAGATAAACAGCAGAGATATTGAAAAGATAAACGTATTCAGAGGCATGTTCGACAGCTGGATATTTTTGTCGATAATTTTCGCCACTGTGGCATTTCAAGTGGTGATAGTTGAATTCCTGGGAACGTTTGCCAGCACCGTGCCTCTAAACTGGCAATTCTGGGTACTGAGCGTGTTAATTGGAGCAGTTAGCATTCCTATAGCTGCTATCCTGAAGTGCATCCCAGTTGAAAGAGATAACAGTAAGAAGCACCATGATGGTTATGAGGCATTGCCATCTGGTCCCGAGCTGGCATAA 3273 0.4207 MEKTLLKDFELQHKNPSVEALRRWRSAVTLVKNRRRRFRMVADLDKRDEAQQIRQGIKVFLPLSSSVSLLLLSLLSLCFYAYPYRNCLGIDLTNFNTPYLAYPVRKKFELLSMFKRQHYNLSMLNWFTVAAGNRVEYKLPSDVRESGFCIHPEEIASIVRGHDNKILNNIGGVEAIARKLSVSVDGGVSEESINRRQQIYGFNRFTEKPSRSFLMFVWDALQDLTLIILIVCAVVSLGVGIATEGWPKGTYDGVGIILSIFLVVTVTAVSDYKQYLQFRDLDKEKKKIFVQVTRDGKRQKISIYDIVVGDVVHLSTGDQVPADGLFISGYFLLIDESSLSGESEPVNVNEEKPFLLSGTKVQDGQGKMIVTTVGMRTEWGKLMETINEGGEDETPLQVKLNGVATIIGKIGLTFAILTFVVLIIRFLVEKAQNGEFANWSTADALKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNRMVVTKTWICEKAMQITGNESADELKTCTPEGVQNILLQAIFQNTSAEVVKDKDGKNTILGTPTESALLEFGCLLGADFDAYAQRKMYKILKVEPFNSVRKKMSVLVGLPDGGVRAFCKGASEIILKMCNKIIDCNGEVVDLPEEHANNVLSIINDFASEALRTLCLAFKDINEMHGEANIPDSGYTLIALVGIKDPVRPGVKEAVQICKAAGITIRMVTGDNIHTAEAIAKECGILTEGGVAIEGPTFRDLSSEEMMDTIPRIQVMARSLPLDKYKLVNNLRSMFGDVVAVTGDGTNDAPALREADIGLAMGIAGTEVAKENADVIILDDNFTTILSVVKWGRSVYINIQKFVQFQLTVNVVALVINFFSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLKRPPVARGANFITKPMWRNIIGQSIYQLIILAILNFDGERLLGITGSDATEVLNTLIFNTFVFCQVFNEINSRDIEKINVFRGMFDSWIFLSIIFATVAFQVVIVEFLGTFASTVPLNWQFWVLSVLIGAVSIPIAAILKCIPVERDNSKKHHDGYEALPSGPELA 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03104 1090 PRINTS P-type cation-transporting ATPase superfamily signature 704 715 - -
Vimu6g03104 1090 PRINTS P-type cation-transporting ATPase superfamily signature 504 518 - -
Vimu6g03104 1090 PRINTS P-type cation-transporting ATPase superfamily signature 807 826 - -
Vimu6g03104 1090 PRINTS P-type cation-transporting ATPase superfamily signature 726 736 - -
Vimu6g03104 1090 PRINTS P-type cation-transporting ATPase superfamily signature 335 349 - -
Vimu6g03104 1090 PRINTS P-type cation-transporting ATPase superfamily signature 831 843 - -
Vimu6g03104 1090 PANTHER CATION TRANSPORTING ATPASE 142 1068 - -
Vimu6g03104 1090 FunFam Calcium-transporting ATPase 266 387 - -
Vimu6g03104 1090 NCBIfam HAD-IC family P-type ATPase 445 526 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g03104 1090 NCBIfam HAD-IC family P-type ATPase 256 426 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g03104 1090 NCBIfam HAD-IC family P-type ATPase 778 894 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g03104 1090 NCBIfam HAD-IC family P-type ATPase 600 752 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g03104 1090 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 510 716 IPR023299 GO:0000166
Vimu6g03104 1090 ProSitePatterns E1-E2 ATPases phosphorylation site. 506 512 IPR018303 -
Vimu6g03104 1090 Gene3D - 187 387 - -
Vimu6g03104 1090 Pfam E1-E2 ATPase 289 482 - -
Vimu6g03104 1090 SFLD C1.7: P-type atpase like 486 859 - -
Vimu6g03104 1090 PRINTS H+-transporting ATPase (proton pump) signature 839 864 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g03104 1090 PRINTS H+-transporting ATPase (proton pump) signature 807 823 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g03104 1090 PRINTS H+-transporting ATPase (proton pump) signature 664 682 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu6g03104 1090 CDD P-type_ATPase_Ca_PMCA-like 193 940 - -
Vimu6g03104 1090 SMART Cation_ATPase_N_a_2 169 241 IPR004014 -
Vimu6g03104 1090 FunFam Calcium-transporting ATPase 824 1070 - -
Vimu6g03104 1090 SUPERFAMILY Calcium ATPase, transduction domain A 289 385 IPR008250 -
Vimu6g03104 1090 FunFam Calcium-transporting ATPase 704 852 - -
Vimu6g03104 1090 Pfam Cation transporting ATPase, C-terminus 892 1065 IPR006068 -
Vimu6g03104 1090 SUPERFAMILY Calcium ATPase, transmembrane domain M 171 1068 IPR023298 -
Vimu6g03104 1090 Pfam Cation transporter/ATPase, N-terminus 171 236 IPR004014 -
Vimu6g03104 1090 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 49 IPR024750 GO:0005516
Vimu6g03104 1090 SUPERFAMILY HAD-like 503 912 IPR036412 -
Vimu6g03104 1090 Pfam haloacid dehalogenase-like hydrolase 502 821 - -
Vimu6g03104 1090 Gene3D - 16 65 - -
Vimu6g03104 1090 Gene3D - 219 1066 - -
Vimu6g03104 1090 Gene3D - 501 852 IPR023214 -
Vimu6g03104 1090 NCBIfam calcium-translocating P-type ATPase, PMCA-type 164 1069 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vimu6g03104 1090 Gene3D - 514 711 IPR023299 GO:0000166
Vimu6g03104 1090 FunFam Calcium-transporting ATPase 514 711 - -
Vimu6g03104 1090 SFLD p-type atpase 486 859 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03104 Vimu-Chr6 27369194 27381954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03104 129 1087 Primary Pumps ATPases AT3G57330 72.054 0.0 1423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03104 K01537 - gmx:100783489 1694.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03104 6 27369194 27381954 Vimu6g03104 6 27369194 27381954 ECH
Vimu6g03104 6 27369194 27381954 Vimu3g00450 3 4415284 4423342 PCT