Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03100 ATGAGCCAGGTGGAACCTAATCATGGTTCCCTCACCCTTTCTAGCATAGGTTTCCAAACTGAAGCTGAGAACAAAAGCAAATCTAATAAAGGTAAGTCATTTGGTTCACCCAGTGAGAATCTCAAGAGCAAAGGAAAGCCCTTTGACACCAATGAGAAGAAGAAGAAAGCATTTAGGGTTGTAGAAAAACAACAAATGGAGTTTGCCCCTTTTGCTGCAAAGTCATTTTCAGAACTTCGGCTCCCACATGTGTTGATTGAGAGGCTAGAGGAGAAGGGTTTTACTGTTCTGACTGAAGTTCAGTCTGCTGCAGTTCCCTCAATTCTGAACAACCGTGATGTCATAATTCAGTCTTACACCGGTTCAGGGAAGACACTAGCTTATCTGCTTCCTATTCTCTCGGTTGTTGGACTGCTGAGGGTGAAAGGTTATGATGGTGATGAGAATGGGAAGAAGTTGGGAATCGAAGTAGTGATTGTTGCTCCTTCTAGAGAGCTCGGAATGCAGATAGTGAGGGAGTTTGAGAAAGTGCTAGGAATGGATAACATAAGAGTGGTTCAGCAGCTTGTGGGGGGTGCGAACCGAACCAGACAGGAAGACGCTCTCAAGAAAAACAAACCTGCAATTGTTGTTGGCACACCTGTTGATGAGCTCTTGTCTTTCAATTTCCGGGAAGACATGCACCGGATATTGGAGCATGTAGGGAGGAGATCAAGTGCAGAGCCAAGCTCAAATTCAGCAAAGACTGGGCTCCAAGCTAAGAAAATTGTCCCACTTGAAACTTTCTCTCCCTCTGAGCCTGTCACTTTATCCCGGTCTTCGCCGAGCTCAGCTATGCCATCTCAAGCAGTAGTTGAGAGTCTGCCTCCTGCTCTGAAACACTATTACTGTGTGACAAGGTTGCAGCACAAATTTGATCTAAAGGATGTTGTCTTCAAGCTGGAGGCCTGTGGAATGAAAGCTGTGAAGTTACATGGGGATCTAGGGAAGCTTGCTAGAGGGTTGAATGTGGCAGGATGTGATCTTGTGGTTAATCTTGACTTGCCAACAGATTCAATTCATTATGCACACCGGGCTGGCCGAACTGGTCGGCTTGAGGGGAAACTACTTGTCACTGAAGAAGAGAAAACATTAAGCACTTCTACAAGTTGA 1152 0.4549 MSQVEPNHGSLTLSSIGFQTEAENKSKSNKGKSFGSPSENLKSKGKPFDTNEKKKKAFRVVEKQQMEFAPFAAKSFSELRLPHVLIERLEEKGFTVLTEVQSAAVPSILNNRDVIIQSYTGSGKTLAYLLPILSVVGLLRVKGYDGDENGKKLGIEVVIVAPSRELGMQIVREFEKVLGMDNIRVVQQLVGGANRTRQEDALKKNKPAIVVGTPVDELLSFNFREDMHRILEHVGRRSSAEPSSNSAKTGLQAKKIVPLETFSPSEPVTLSRSSPSSAMPSQAVVESLPPALKHYYCVTRLQHKFDLKDVVFKLEACGMKAVKLHGDLGKLARGLNVAGCDLVVNLDLPTDSIHYAHRAGRTGRLEGKLLVTEEEKTLSTSTS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03100 383 SMART ultradead3 93 295 IPR014001 -
Vimu6g03100 383 CDD DEADc 85 237 - -
Vimu6g03100 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 365 IPR027417 -
Vimu6g03100 383 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 74 102 IPR014014 GO:0003724
Vimu6g03100 383 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 105 214 IPR014001 -
Vimu6g03100 383 MobiDBLite consensus disorder prediction 1 44 - -
Vimu6g03100 383 Gene3D - 330 372 IPR027417 -
Vimu6g03100 383 Gene3D - 39 270 IPR027417 -
Vimu6g03100 383 SMART helicmild6 172 366 IPR001650 -
Vimu6g03100 383 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 237 IPR027417 -
Vimu6g03100 383 Pfam Helicase conserved C-terminal domain 331 365 IPR001650 -
Vimu6g03100 383 MobiDBLite consensus disorder prediction 1 50 - -
Vimu6g03100 383 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 331 368 - -
Vimu6g03100 383 Pfam DEAD/DEAH box helicase 98 216 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03100 Vimu-Chr6 27330857 27332336 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03100 44 382 Eukaryotic Initiation Factors Gene Family AT3G13920 23.039 8.33e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03100 - - gmx:100812968 511.916