Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03093 ATGAGGGTCACATCTAAGGTGAAGGTTTCAGGGAATGAAGTCGAGATCAACGGACTCGGGAGGGTGGAGAATTCGTCGGCGTCTAAGGCGGCGATAAAGTCAATGCCGATTGTCGTGACAGAGGCGCACTGTGTTGTTTGCAAAGAGGCCTTCGAGTTAGGCACGTTGGCGCGTGAGATGCCATGCAAGCACCTCTACCACTTTGATTGCATTCTCCCGTGGCTCTTGATGCGAAACTCGTGCCTGGTGTGCCGCCACGAGTTGACGTCGGAGCAAGCGTCATCAGAGAGTAGAGTTGTGGGCCAGATCGAAGAGGAAGCGGTAGGGTTGACCATATGGAGGCTGCCTGGTGACGGATTCGCAGTGGGTAGTGAAGGTTCTAGGAGAATCTCTCTGTTAGTTGGAAGAGAGAGAGTGAGGGAAAGTCGAGGTGGAATTGGCAGAATGTTCCTGAATTGGTTTGGGAAAATTGGGGCTTTGACTAAAAGTCTAGAAGAAGAAGTTCCACGAGAACTTGGGTTTTGGAATATTGATTTGGATGGAGTTGTATTTCGAAAGCAAGTTTTCAAATTCTAG 576 0.4965 MRVTSKVKVSGNEVEINGLGRVENSSASKAAIKSMPIVVTEAHCVVCKEAFELGTLAREMPCKHLYHFDCILPWLLMRNSCLVCRHELTSEQASSESRVVGQIEEEAVGLTIWRLPGDGFAVGSEGSRRISLLVGRERVRESRGGIGRMFLNWFGKIGALTKSLEEEVPRELGFWNIDLDGVVFRKQVFKF 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03093 191 Pfam Protein of unknown function (DUF1117) 108 123 IPR010543 -
Vimu6g03093 191 SMART ring_2 44 84 IPR001841 -
Vimu6g03093 191 ProSiteProfiles Zinc finger RING-type profile. 44 85 IPR001841 -
Vimu6g03093 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 91 IPR013083 -
Vimu6g03093 191 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 24 88 - -
Vimu6g03093 191 Pfam Ring finger domain 43 85 IPR001841 -
Vimu6g03093 191 SUPERFAMILY RING/U-box 39 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03093 Vimu-Chr6 27297321 27298715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03093 20 97 C3H Transcription Factor Family AT5G20910 35.227 5.47e-16 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03093 K11982 - gmx:100784822 220.32