Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03082 ATGGTTGTTCTAAGTTTCGCGGTGGTTGATGATGGCTATGCTAGTGGCACTGATGCCAGAGTTGAAGGAGCTGCAAGTTTTGGAGCACAGAGGAAGAAGTTGTTGCTTAATGGAATAACTGGCTTTGCCGAACCTGCTAGGGTTATGGCTGTCATGGGTCCTTCTGGCTGCGGCAAAACCACCTTTCTTGACTCTTTGACTGGAAAACTTGCTCCAAATGTTGTAATGAGCGGGAACATTCTAATCAATGGGAAGAAAAACTTGAATTCCAGAGATGTGTCCTATGTAGCTCAAGAGGAACTTTTTTTGGGAACTTTGACTGTAAAAGAGACTCTCACATTCTCTGCAAACATGAGACTTCCTTCCAAAATGACCAAAGAAGAGATAAACAAAGTGGTGGAAGAAACCATAATGGAAATGGGTCTGGAAGATTGTGCAGATACAAGGATTGGGAATTGGCATTGTAGGGGTATTAGTAATGGTGAAAAGAAGAGACTTAGCATTGGCCTTGAAATTTTAACACAACCCCATTTCTTACTTCTTGATGAACCTACAACTGGCCTTGATAGTGCCTCAGCTTTCTATGTCATTCAAGCACTATGCCACATTGCTCACAAAGGAAAGATAGTTATCTGCTCCATTCACCAACCCAGTAGTGAGATTTTTTATCTATTTGATGATTTGCTTTTGCTTTCAAGTGGGGAAACTGTTTATTTTGGACAAGCAAAGAATGCTCTAAAGTTTTTTGCGGATGCAGGGTTTCCCTGTCCTACTAGAAGAAATCCTTCAGATCATTTCCTGATGTGTACTAATTTGGACTTTGATTTGATTACTGAAGTACTAGAGAGGACTCAATTATGTTTGGCATCATCGAAGTCAACAATGGAAATGAGAAAATCAGAGATCAGAAGGACACTGATTGAGACTTATAAAAGTTCAAAGCTAATGTTCAATGCAAGAAGTAAAGTTCAACAACTGAAACACAATGAAGAACAAGCAATTAAGCACTACACAGGTAGCACCACCTCCTGGAGGAAACAATTGTGTACATTGACCAAGCGATCTTTCTTAAACATGACTAGGGACATTGGTTACTACTGGCTGAGGATAATATTCTACATAATGGTAGGAATCAGTATTGGCACCCTCTTTTTTCACATTGGCACAGGAAACAACTCAATCTTGGCCAGAGCTAAGTGTGTATCATTCATCTATGGGTTCATGATTTGTTTGTCATGTGGAGGATTACCATTTTTCATCGAAGAATTGAAGGTGTTCTATGGTGAAAGGTCCAAAGGGCATTATGGAGAGGCTGTGTTTGTAGTATCAAACATCATATCATCATTCCCTTTCCTTGTTCTAACATCTTTTTCCTCCGGAACAATCATTTACTTCATGGTGCAATTTCATCCGGGTTTAACTAATTATGCATTTTTCTGTATCAACTTATTCTGCTGCCTATCTGTTGTTGAGTGTTGCATCATGGCTGTAGCCTCACTGGTCCCCAATGTGCTGATGGGCATAGGAATAGGAACTGGTGTAATTATCTTCATGATGATGCCCTCCCAAATATTCAGATCATTACCTGAGCTTCCAAAGTTCTTTTGGCGCTATCCTATGTCCTACCTTAGTTTTGCTTCCTGGGCAGTGCAGGGAGAATACAAGAATGACATGTTGGGGGTAGAGTTCGATCCTTTGCTACCTGGTGATGCCAAGGTTAGTGGAGAAAAAGTTCTACCATCGATACTTGGGGTTCCATTGGATCATAACAAATGGTGGGACTTAACAGCATTGGCTACCTTATTATTAGTTCACAGACTTGTTCTTTTCTTGGTGCTTCGGTTTGTCAAAAGAGCAAAATCACCTAAGCTGTGGTTCTATGCAAAGAAAAGTCTACACATTGGAAAGAGATGTTTGCTCAATGACAAGCCATCTGTCTCTTCCAGGAAACTAGCTCAGCATCCATTATCGTCTCAAGAGGGTCTTATGTCTCCAAACCTTGCAATGTAA 2010 0.4055 MVVLSFAVVDDGYASGTDARVEGAASFGAQRKKLLLNGITGFAEPARVMAVMGPSGCGKTTFLDSLTGKLAPNVVMSGNILINGKKNLNSRDVSYVAQEELFLGTLTVKETLTFSANMRLPSKMTKEEINKVVEETIMEMGLEDCADTRIGNWHCRGISNGEKKRLSIGLEILTQPHFLLLDEPTTGLDSASAFYVIQALCHIAHKGKIVICSIHQPSSEIFYLFDDLLLLSSGETVYFGQAKNALKFFADAGFPCPTRRNPSDHFLMCTNLDFDLITEVLERTQLCLASSKSTMEMRKSEIRRTLIETYKSSKLMFNARSKVQQLKHNEEQAIKHYTGSTTSWRKQLCTLTKRSFLNMTRDIGYYWLRIIFYIMVGISIGTLFFHIGTGNNSILARAKCVSFIYGFMICLSCGGLPFFIEELKVFYGERSKGHYGEAVFVVSNIISSFPFLVLTSFSSGTIIYFMVQFHPGLTNYAFFCINLFCCLSVVECCIMAVASLVPNVLMGIGIGTGVIIFMMMPSQIFRSLPELPKFFWRYPMSYLSFASWAVQGEYKNDMLGVEFDPLLPGDAKVSGEKVLPSILGVPLDHNKWWDLTALATLLLVHRLVLFLVLRFVKRAKSPKLWFYAKKSLHIGKRCLLNDKPSVSSRKLAQHPLSSQEGLMSPNLAM 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03082 669 Pfam ABC transporter 43 185 IPR003439 GO:0005524
Vimu6g03082 669 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 27 628 - -
Vimu6g03082 669 MobiDBLite consensus disorder prediction 650 669 - -
Vimu6g03082 669 Pfam ABC-2 type transporter 347 552 IPR013525 GO:0016020|GO:0140359
Vimu6g03082 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 250 IPR027417 -
Vimu6g03082 669 SMART AAA_5 45 235 IPR003593 GO:0016887
Vimu6g03082 669 Pfam ABC-2 type transporter 215 267 IPR043926 GO:0140359
Vimu6g03082 669 Gene3D - 23 252 IPR027417 -
Vimu6g03082 669 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 19 258 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03082 Vimu-Chr6 27156533 27164800 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03082 43 227 Calmodulin-binding Proteins AT2G36910 26.904 2.54e-10 62.0