LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g03080	ATGGAATTGAAGGTGGTGACAGAGATGCAAGTGAGCCTCCTGCTGCTGCTGATGATTGCGTTAGCAAAAACAGCAACTGTAGCAGATGACCAAGCCCTGCCCGGCTGCCCCAACAAGTGCGGTGATGTTTCAATTCCATACCCCTTTGGTGTAGGAAAAAACTGTTCCTTTCAGACAGACTTGAATCTCAACTGCAGTACAGACTCCATTCTATACGTAGGTAACATCCCAGTTCTGAACATAACCCTCCTAGGTCAATTGGAGATGAGTTTCTTCGTCTCCTATATCTGCAAAGTCGACATTTTTAACGGAGTAACAGAACCCGTCTCAGCCGAACTCAATATTCCATCCTTCACCATTTCCAGCACGGAAAACAAGTTCATGAGTATAGGCTGCGACACGTACGGGTATCTAAAAAGTTTCGACAACCAATCTAGATACTTATCAACAACAGGGTGCTTGACAGTATGTGGGGACAATCTAGAAAATTTGGAAAACATGCAGACGAATGATGGGAAATGTGCAGGCAGAGGCTGCTGCCAGGTGGATATACCACCTCGAATGAAGAACATCGCTATAAAAGCATATACCTTTAATAATTTCAGTGACTCTCCCGATTCCAACAGCTGCAGCGTTTCGTTTGTGGTGAAAAATGGCGGCTACAACTTCTCCATGGATCATTTGAACCGCGTCCCATTAAATATGACTCCCATGATTGTTGATTGGAGTGTTGGAGATGCTCCCTGTAACGTTTCCAAGGATAAAGCCAACTATGCGTGCAAAAGTGATTATAGCGTTTGCGAGGACCCACCCTCTGCCGGTGGAAATGGCTACCTATGCAAATGTAAACCAGGTTTTGAGGGCAACCCTTACCTTCCCCAAGGTTGCACAGACTTTCCAGATTGTAAAAGGGACAAACACAACTGCGCAAGAGCAGAATATTGTCATGAGACTCCTGGCTCTTTTGAATGTTTATGTCCTGAAGGAATGATCGGAAATGCAACAAACGAAGGTGGAGGATGCCAGCCAAAGCAGCGGTCTGATGCATTTACCAAGATCTTCATTGGAGCAGGTGTAGGATTAATTGCTCTCTTTGTGGGAGTTTCTTTGCTGTACTTGATGCTCCAGAAAAGGAGAGTCCTCAAACTAAAGGAAAAGTTCTTTCAGCAAAATGGGGGCATAATTCTAACACAGAAACTCTCTACTAGAAGAGACTCGTCTCAATCCACCACAATTTTCAGTTTCGAGCAACTCAATAAAGCCACCAACAATTTTGATGAGAATTTGATCATCGGCAAAGGAGGTTATGGAACAGTTTTCAAAGGAGTTCTCTCAAATAATCAAGTTGTTGCTATCAAGAAGTCCAAAATAGTGGACGTGAGCCAGGTGGAGCAATTCATCAACGAGGTCATTATACTGTCACAGATTAATCACAGGAATGTGGTCAAACTCCTAGGTTGTTGTCTAGAGACAGAAGTTCCTTTATTGGTGTATGAATTTGTTAAAAATGGCACTCTTTTTGATTATTTGCATAAACAAAGCCAAGTGGGTAATGTATCTTGGAAAACACGTCTAAGGATTGGCGCTGAAGCAGCAGGAGCTTTGTCATATCTACACTCAGCAGCTAGCATACCCATCATCCACAGGGATGTGAAAACTGCCAACATACTCTTAGATGACAATAACACTGCCAAAGTTTCTGACTTTGGAGCTTCGCGATTGGTTCCACAAGACCAAACTGAAATAGCCACAATTGTGCAAGGAACCTTTGGGTATTTAGACCCAGAGTACATGCAGTCAGGCCAATTGACTGAAAAGAGTGATGTTTATAGTTTTGGAGTAGTGCTTGTAGAACTGCTAACTGGGGAGGAGCCTTTCTCTTTTCAAAGGGCAGAAGATAAACGAAGTCTTACATTTCACTTTGTATGTAGCTTGGAAGAGGATCATCTATTTGATGTTCTTCAGATTGGTGTTGAGGATGAAGAAAATAAACAGGAAATCATGCAGGTTGCTATTCTTGCTGCCAGGTGCTTGAAACTTAGAGGGGAGGAAAGACCTAGCATGAAGGAAGTGGCAATGGAATTGGAGGGAATAAGGCTTATGGACAAACATCCTTGGACCAATACAGGCCAAAATTTTGAGGAGAGACAATACTTGCTTTCTGAGGCACATAGCATTCGTGAACCTGGTGACAGTAGTGGCCAACAGAATATTACTGGATATGATAGTGTGAGGGAACTTCAATTAATTGACTTTGGTGATGGAAGATGA	2271	0.4293	MELKVVTEMQVSLLLLLMIALAKTATVADDQALPGCPNKCGDVSIPYPFGVGKNCSFQTDLNLNCSTDSILYVGNIPVLNITLLGQLEMSFFVSYICKVDIFNGVTEPVSAELNIPSFTISSTENKFMSIGCDTYGYLKSFDNQSRYLSTTGCLTVCGDNLENLENMQTNDGKCAGRGCCQVDIPPRMKNIAIKAYTFNNFSDSPDSNSCSVSFVVKNGGYNFSMDHLNRVPLNMTPMIVDWSVGDAPCNVSKDKANYACKSDYSVCEDPPSAGGNGYLCKCKPGFEGNPYLPQGCTDFPDCKRDKHNCARAEYCHETPGSFECLCPEGMIGNATNEGGGCQPKQRSDAFTKIFIGAGVGLIALFVGVSLLYLMLQKRRVLKLKEKFFQQNGGIILTQKLSTRRDSSQSTTIFSFEQLNKATNNFDENLIIGKGGYGTVFKGVLSNNQVVAIKKSKIVDVSQVEQFINEVIILSQINHRNVVKLLGCCLETEVPLLVYEFVKNGTLFDYLHKQSQVGNVSWKTRLRIGAEAAGALSYLHSAASIPIIHRDVKTANILLDDNNTAKVSDFGASRLVPQDQTEIATIVQGTFGYLDPEYMQSGQLTEKSDVYSFGVVLVELLTGEEPFSFQRAEDKRSLTFHFVCSLEEDHLFDVLQIGVEDEENKQEIMQVAILAARCLKLRGEERPSMKEVAMELEGIRLMDKHPWTNTGQNFEERQYLLSEAHSIREPGDSSGQQNITGYDSVRELQLIDFGDGR	756

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g03080	756	FunFam	Wall-associated receptor kinase 2	501	718	-	-
	Vimu6g03080	756	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	26	707	IPR045274	GO:0007166
	Vimu6g03080	756	Pfam	Wall-associated receptor kinase galacturonan-binding	36	84	IPR025287	GO:0030247
	Vimu6g03080	756	Pfam	Protein kinase domain	429	691	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu6g03080	756	CDD	EGF	307	335	-	-
	Vimu6g03080	756	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	546	558	IPR008271	GO:0004672\|GO:0006468
	Vimu6g03080	756	ProSiteProfiles	Protein kinase domain profile.	425	707	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu6g03080	756	SMART	egf_5	248	297	IPR000742	-
	Vimu6g03080	756	SMART	egf_5	301	342	IPR000742	-
	Vimu6g03080	756	ProSitePatterns	Protein kinases ATP-binding region signature.	431	454	IPR017441	GO:0005524
	Vimu6g03080	756	FunFam	Fibrillin 2	293	337	-	-
	Vimu6g03080	756	CDD	STKc_IRAK	431	698	-	-
	Vimu6g03080	756	Gene3D	Transferase(Phosphotransferase) domain 1	501	718	-	-
	Vimu6g03080	756	FunFam	Wall-associated receptor kinase 2	395	500	-	-
	Vimu6g03080	756	Gene3D	Laminin	248	341	-	-
	Vimu6g03080	756	SUPERFAMILY	Protein kinase-like (PK-like)	404	696	IPR011009	-
	Vimu6g03080	756	Gene3D	Phosphorylase Kinase; domain 1	392	500	-	-
	Vimu6g03080	756	SMART	serkin_6	425	707	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g03080	Vimu-Chr6	27147145	27150487	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu6g03080	9	756	Receptor kinase-like Gene Family	AT1G21230	43.347	0.0	580

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Vimu6g03080		Pkinase	1.4e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g03080	-		-	gmx:100819535	990.719