Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03078 ATGAAAATAACAAATAATAATAATAAAGGGTTCATGTTGGAAGGAGGAAGAAAGTGTACTCCACCGCCGTTTTTGCTCAAGACCTACATGCTTGTCGAGGATCCGGCTACCGACAACATCGTCTCGTGGAATGTCGACGGGACGGCGTTCGTGGTGTGGCAGCCGGCCGAGTTTGCTCGTGATCTCCTCCCAACGTTCTTCAAGCACAGCAACTTCTCCAGCTTTGTGCGCCAACTAAATACTTATGGTTTTCGTAAAGTTGCAACAAGTAGATGGGAGTTTTTCAATGAGAGGTTCAAGAAAGGTGAAAGAGAACAGCTAAATGAGATTCAGAGAAGAAAAGCTTGGAGTAACAAGCAACAAACAGCTCAAGATTCTGATGAAGATCAAAGGTCATCATCAACTTCATCATCTTCTGGGTACAGTACTCTGGTGGATGAAAACAAGAGGCTTAAGAAAGAGAATGGAGTATTGAACTATGAGCTAACGAGCATGAAAAGAAAGTGCAAAGAGCTGGTTGATTTGGTGGCGAAATATTCATCACATGCAGATGCAGAAGAGAATAAGGAAGAAGATGAAAGGCCAATGCTTTTTGGAGTGAGATTAGATGTTGAAGGAGGGAGGGAGATTAAGAGGAATAGAAGCGCAAGCATTATGCTGTTTCAGTCATGCAAATAG 678 0.4277 MKITNNNNKGFMLEGGRKCTPPPFLLKTYMLVEDPATDNIVSWNVDGTAFVVWQPAEFARDLLPTFFKHSNFSSFVRQLNTYGFRKVATSRWEFFNERFKKGEREQLNEIQRRKAWSNKQQTAQDSDEDQRSSSTSSSSGYSTLVDENKRLKKENGVLNYELTSMKRKCKELVDLVAKYSSHADAEENKEEDERPMLFGVRLDVEGGREIKRNRSASIMLFQSCK 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03078 225 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g03078 225 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 176 IPR027725 -
Vimu6g03078 225 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g03078 225 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Vimu6g03078 225 FunFam Heat stress transcription factor B-4 16 114 - -
Vimu6g03078 225 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g03078 225 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g03078 225 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g03078 225 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu6g03078 225 Gene3D - 16 114 IPR036388 -
Vimu6g03078 225 MobiDBLite consensus disorder prediction 113 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03078 Vimu-Chr6 27121120 27122950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03078 21 203 HSF AT2G41690 53.623 3.08e-68 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu6g03078 HSF_DNA-bind 4.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03078 K09419 - gmx:100802739 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03078 6 27121120 27122950 Vimu6g03078 6 27121120 27122950 ECH
Vimu6g03078 6 27121120 27122950 Vimu3g00426 3 4184773 4187865 PCT