Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03074 TTGCATGTGGGTAACACTCTTCCGCTTGAGGCACATGTTGATGCCATCCTTAAAGTTTTACCACCAGAGTATGCACCAATCATTTCTGTTATTGAAAACAAGTTTGATACTCTCTCTGTCGTTGAAGTGGAGGTGGTGGTTTTTAGAGCAGAGAGGCTGTGGCAGCACCATCAATGGCTGTTGAGAGTGTGGTTGAGGCTGTACTGGAAGCTTTTCCAATTTTCAATGCCAAATTTGTTTGAATTTGCAATTTCTTCTGGAATCCTTACAGCTTGCACCATGTATAATTTATTCAAGTATAGTGATAAGACACTGGTGTTTGCATACTTTTTTGCTTTTGGGCTAAGTGCAATCATGCTCTCATTCCTTATATCAACATTTTTCAAACGGGCTAAAACAGCTGTAGCTGTTGGAACTCTATCTTTTCTTGGAGCTTTTTTCCCATATTACACAGTAAATGACGAGGGAGTTTCAATGTCGTCCACCTTCAGAATCTTGAAGGTTATTGCTTCTTTGCTTTCACCTACTGCCTTTGCTTTGGGTTCGATCAACTTTGCCGATTATGAGCGTGCACATGTCGGACTTCGTTGGAGTAACATATGGAGGGAATCATCTGGAGTGAACTTTCTTGCATGTCTTCTGATGATGATACTTGATACACTGCTATATTGTGCGATTGGACTTTATTTTGACAAGGTTCTTCCGAGGGAGTATGGAAGGAGATACACATGGAGCTTTATTTTCCAAAGGGACTTCTGGAGGAAGAAAAAAGTTGTAAAAGATAGTTCCTCCGTTTCTAATGTTAAAGTATTTGGTAAGAATTCTGAGTCAGAAGGGAAGATTTCAAGGGAATATACTTCCAGACCTGCCATTGAACCAATAAGCTTAGACATGAAACAGCAGGAGCTTGATAGCAGGTGCATTCAAATCAGGAATTTACATAAAGTGTATGCTACAGAGAAAGGAGATTGCTGTGCTGTTAACTCTTTACAGCTGACACTGTACGAAAACCAGATTGTTGCCCTCCTAGGACATAATGGAGCTGGGAAAAGCACGACAATCTCAATGCTTGTTGGTCTGCTTCCTCCTTCTTCTGGGGATGCTTTGGTATTTGGAAAAAATATTGTATCAGATATTGATGAGATACGGAAGGTTTTGGGTGTCTGCCCACAACATGATATACTCTTTCCTGAATTAACAGTTAGAGAACATTTGGAACTATTTGCTATATTAAAGGGAGTGGAGGAACACTTGTTGGACAATGCTGTTGTTAATATGGCTGATGAGGTGGGCCTGGCTGATAAAATCAACAGTATTGTGAGAACTCTTTCTGGTGGCATGAAGAGGAAATTGTCTCTTGGAATTGCATTGATTGGCAACAGTAAGGTTATAGTCCTTGATGAACCTACTAGTGGAATGGATCCATACTCAATGCGCTTGACTTGGCAGTTAATAAAAAAAATTAAGAAGGGCAGGATAATTTTGCTAACTACACATTCTATGGATGAAGCAGATGAATTAGGTGACCGGATAGCCATCATGGCCAATGGCTCTCTGAAATGCTGCGGAAGGTTAATTTCATTTCCACTTTTTCTTAGATATTGTTATGTCTTGTCAGCTCCCACTGCTTCCATTGCTAGTGATATAGTATACCGACATGTTCCAAATGCAACATGTGTAAGCGAGGTTGGAACTGAGATTTCTTTTAGGCTTCCAATGGCATCCTCATCAGCCTTTGAGAGGATGTTTAGGGAAATTGAAGGTTGCATGAAAAAACCAGTTTCGAACATGGAATTGAATGGTAAAATTGAAAAAGACAATATTGGTATTGAAAGCTATGGCATATCTGTAACAACCCTGGAAGAGGTATTTTTAAGAGTTGCAGGATGTGATGCTGATGAGGTTGAATGCTTTGAAGAAAATAACCATTCTCTGATATCAGACTCTGTGGCTTCACTTCCTACTAATGATGATGCTTCCACAAAAATAAGTTGTCTTAAAATTCTTGGAAATTATAAGAGGATTCCGGGTTTGGTGTCTACCATGTTGGGAAGAGCTTGTCGATTAATTTTTGCTACATTTTTTAGTTTTATCAACTTCTTGGGTGTGCAGTGCTGCAGTTGTTGTCTCATTACTAGGTCAACATTTTGGCAACATTTTAAAGCCTTATTCATTAAAAGGGCAATATCTGCTCGCAGAGATAACAAAACAATTGTTTTCCAGCTAATGATTCCTACTCTCTTCCTGTTTGTCGGTCTTCTATTTCTTAAGCTCAAGCCACATCCTGATCAGCAATCGCTGACCCTTTCAACTTCTCACTTTAATCCTCTATTGAGTGGTGGTGGTGGGGGAGGTCCAATTCCATTTAATCTTTCTTTTCCAATTGCTGAAAAGGTAGCACAAAATGTCATGGGAGGTTGGATACAGAGGTCCAAGTCGAGCTCATACAGATTCCCTGATTCAGAAAAAGCATTGGCTGATGCAGTGGAAGTAGCGGGACCAACACTGGGACCTGCTCTACTTTCTATGAGTGAATATTTGATGTCTAGTTTTAATGAATCCTACCAATCTAGGTATGGGGCAATTGTGATGGATGATCAAAGTAATGATGGAAGCTTAGGATACACTGTATTACACAACTGTTCTTGTCAACATGCTGCTCCCACCTTTATCAATTTGATGAATTCTGCGATTCTTAGGCTTGCAACTCAAGACACAAATATGACAATTTGGACACGCAACCACCCTCTGCCAACGACACAAAGCCAGCGCTTACAACGTCATGATCTGGATGCTTTCTCTGCTGCAGTTATTGTCAACATTGCTTTCTCTTTTATACCTGCCTCATTTGCCGTTTCAATTGTTAAGGAACGTGAAGTGAAAGCTAAGCAGCAACAACTAATCAGTGGGGTATATAATTTGTCAAAAGACCGCATTGGATACTGCTTTTCTATCTCATGCTGA 2964 0.4005 MHVGNTLPLEAHVDAILKVLPPEYAPIISVIENKFDTLSVVEVEVVVFRAERLWQHHQWLLRVWLRLYWKLFQFSMPNLFEFAISSGILTACTMYNLFKYSDKTLVFAYFFAFGLSAIMLSFLISTFFKRAKTAVAVGTLSFLGAFFPYYTVNDEGVSMSSTFRILKVIASLLSPTAFALGSINFADYERAHVGLRWSNIWRESSGVNFLACLLMMILDTLLYCAIGLYFDKVLPREYGRRYTWSFIFQRDFWRKKKVVKDSSSVSNVKVFGKNSESEGKISREYTSRPAIEPISLDMKQQELDSRCIQIRNLHKVYATEKGDCCAVNSLQLTLYENQIVALLGHNGAGKSTTISMLVGLLPPSSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFAILKGVEEHLLDNAVVNMADEVGLADKINSIVRTLSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGRLISFPLFLRYCYVLSAPTASIASDIVYRHVPNATCVSEVGTEISFRLPMASSSAFERMFREIEGCMKKPVSNMELNGKIEKDNIGIESYGISVTTLEEVFLRVAGCDADEVECFEENNHSLISDSVASLPTNDDASTKISCLKILGNYKRIPGLVSTMLGRACRLIFATFFSFINFLGVQCCSCCLITRSTFWQHFKALFIKRAISARRDNKTIVFQLMIPTLFLFVGLLFLKLKPHPDQQSLTLSTSHFNPLLSGGGGGGPIPFNLSFPIAEKVAQNVMGGWIQRSKSSSYRFPDSEKALADAVEVAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQSNDGSLGYTVLHNCSCQHAAPTFINLMNSAILRLATQDTNMTIWTRNHPLPTTQSQRLQRHDLDAFSAAVIVNIAFSFIPASFAVSIVKEREVKAKQQQLISGVYNLSKDRIGYCFSISC 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03074 987 CDD ABC_subfamily_A 308 533 - -
Vimu6g03074 987 Pfam ABC-2 family transporter protein 737 972 IPR013525 GO:0016020|GO:0140359
Vimu6g03074 987 Pfam ABC transporter 328 471 IPR003439 GO:0005524
Vimu6g03074 987 SMART AAA_5 336 518 IPR003593 GO:0016887
Vimu6g03074 987 FunFam ATP-binding cassette sub-family A member 12 297 538 - -
Vimu6g03074 987 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 301 632 IPR026082 GO:0016020|GO:0055085|GO:0140359
Vimu6g03074 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 524 IPR027417 -
Vimu6g03074 987 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 308 541 IPR003439 GO:0005524
Vimu6g03074 987 Gene3D - 283 528 IPR027417 -
Vimu6g03074 987 ProSitePatterns ABC transporters family signature. 443 457 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03074 Vimu-Chr6 27061403 27085749 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03074 302 523 Calmodulin-binding Proteins AT2G36910 26.293 2.70e-15 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03074 K05643 - gmx:100803263 1528.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03074 6 27061403 27085749 Vimu6g03074 6 27061403 27085749 ECH