Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03069 ATGGCTTCGTCTTCCTCCGATCCCGGAAAGTCCGCGGAGACGTCGGAAGCGGCGGTGCCAACTGATCAGCTCTTGCTCTACCGAGGATTGAAGAAAGCGAAGAAGGAGAGAGGTTGCACCGCCAAAGAGCGCATCAGCAAAATGCCTCCCTGCGCAGCTGGAAAACGGAGCTCTATATACCGCGGCGTCACCAGGCATAGGTGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAGAGTACGTGGAATCAGAATCAGAATAAGAAGGGAAAACAAGGTTTGGCTGAAATAACTTACCTGTTTTTGTTTTCCTGTTTCGGAATTGGTTCGCTGGACAATGGTTCGTTCGTGGTGGGGCCAGTTTACTTGGGTAAGTTTGCAATCCGTAACTTTCTTATCTTGCTCTCTTCTCTAAATGTCTATGGAGAAGTTTATCCAAATACGGTCTTATTGCTTATCATCATTATTGAAATTTCTCGCTCTACATCCTTTTGTAAGGTAATGATGTTAGTTGCTGATGGATTTTGGATAGGGGCATATGATGACGAGGAAGCAGCTGCTAGAGCTTATGATCTTGCTGCTCTCAAATACTGGGGTCCAGGGACTCTCATTAACTTTCCAGTGACTGATTATACAAGAGATCTTGAAGAAATGCAGAATGTGTCGAGAGAAGAGTACCTTGCATCTTTACGGCGGAAGAGCAGTGGTTTTTCTAGAGGACTATCAAAATATCGTGGACTCTCCAGCTATGTATGTGGAGCTAGTTCTTCTCTGGTTTGCTACACAGCTACAGATTTTTATGATCTGTGTATAAAATCTGATGTGGATTTGACCGCTAACTTACACGTTCATCTTGCATGTGGTGCTAACAAAATTAGTCGGTGGGAGTCGTCATATGGCCGCATATCTGGATCTGATTACTTCAATAGCATGCGTTATGGTGCAGGGGATGATTCAGCAGCAGAAAGTGAATATGTAAGTGGTTTCTGCATAGAAAGAAAGATTGATTTAACTAGTCACATCAAATGGTGGGGATCTAATAAGACTCGACATTCTGACTCTGGGACAAGATTATCATCGGAAGAGAAAAAGCTTGGTTCTGCAGGAGATATTTGCAGTGAACTAAAGCAATTGGAACAGAAAGTTCAACCTACAGAACCTTATCAGATGCCACAGTTAGGAAGGCCACACAATGAGAAAAAGCAAAGAAGTTCTTCAGTCTCTGCCTTAAGGATTCTTTCTCAATCTGCTGCTTACAAGAGCTTGCAGGAGAAAGCGTCAAAGAAACAGGAAAATAGTATTGATAACGATGAGAATGAAAACAAAAATACAGTCAACAAATTGGATCATGGAAAGGCAATTGAGAAACCGTCAAATCATGATGGAGGCAGTGATCGGCTTGACATTGCAATGGGAATGAGTGGGACAATGCCTCTTCAAAGAAATGTCTACCCTTTGACGCCATTCTTGTCAGCACCACTTTTGACAGCTTACAATACTGTTGATCCAATGGTAGATCCTGTTCTCTGGACATCTCTTGTACCCGTACTTCCTGCAGGCCTTTCTCGTACAGATGAGGTTACCAAGACAGAGACCAGTTCAACGTACACAATGTTTCAGCCAGAGGAATGA 1632 0.4332 MASSSSDPGKSAETSEAAVPTDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGLAEITYLFLFSCFGIGSLDNGSFVVGPVYLGKFAIRNFLILLSSLNVYGEVYPNTVLLLIIIIEISRSTSFCKVMMLVADGFWIGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGLSKYRGLSSYVCGASSSLVCYTATDFYDLCIKSDVDLTANLHVHLACGANKISRWESSYGRISGSDYFNSMRYGAGDDSAAESEYVSGFCIERKIDLTSHIKWWGSNKTRHSDSGTRLSSEEKKLGSAGDICSELKQLEQKVQPTEPYQMPQLGRPHNEKKQRSSSVSALRILSQSAAYKSLQEKASKKQENSIDNDENENKNTVNKLDHGKAIEKPSNHDGGSDRLDIAMGMSGTMPLQRNVYPLTPFLSAPLLTAYNTVDPMVDPVLWTSLVPVLPAGLSRTDEVTKTETSSTYTMFQPEE 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03069 543 MobiDBLite consensus disorder prediction 424 463 - -
Vimu6g03069 543 Coils Coil 427 447 - -
Vimu6g03069 543 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 23 427 - -
Vimu6g03069 543 MobiDBLite consensus disorder prediction 384 407 - -
Vimu6g03069 543 ProSiteProfiles AP2/ERF domain profile. 59 207 IPR001471 GO:0003700|GO:0006355
Vimu6g03069 543 SUPERFAMILY DNA-binding domain 174 208 IPR016177 GO:0003677
Vimu6g03069 543 Gene3D AP2/ERF domain 59 209 IPR036955 GO:0003700|GO:0006355
Vimu6g03069 543 MobiDBLite consensus disorder prediction 421 466 - -
Vimu6g03069 543 PRINTS Ethylene responsive element binding protein signature 189 209 IPR001471 GO:0003700|GO:0006355
Vimu6g03069 543 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Vimu6g03069 543 SMART rav1_2 59 213 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03069 Vimu-Chr6 27036333 27039545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03069 21 92 AP2-EREBP Transcription Factor Family AT2G41710 94.444 8.20e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03069 K09285 - gmx:100786651 564.303