Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03049 ATGGTCGAGTGTTTTGTCTATGATATTACTGAATCGTTGCTAAGCAAGCTAGCTTCTTATGTTTACGAAGAAGCTTCTCGAGCCTATGGGGTGTATAACGATCTTCGAGGGATAAAAGACACCTTGTCAATAGTTAAAGGTGTGCTGTTAGATGCTGAGGAGAAGAAGGAACAAAATCATGGCTTGCGGGAATGGCTCAGGCAGATTCGAAACGTCTGCTTCGATGCTGAAGATGTGTTAGATGGACTTGACTGCCAAAACCTGAGAAAGCAAGTTCTCAAAGCTTCAGGCAACACTAGGATGAAGGTAGATCACTTCTTTTCTTCATCTAATTCTCTTGTCTTTCGCTTTAGGATGGCTCATCAAATAAAACATGTTAGGTGTAGATTGGATAAGATAGCAGCTGATGGGAACAAGTTTGGTCTTGAGAGAATTGATGTTGACAACAGACTTGTCGAAAGGAGAGAAATGACTTATTCCCACGTTGATGCTTCTGGGGTGATTGGAAGGGAGAGTGATAGGGAAAAAATTATCAAGATTTTGATGCAACCTCACCCTAATGGTGATGGTTATGGAGATCAAAGTGTTTGTGTTATTCCCATAGTGGGTATTGGAGGGTTGGGAAAGACCACACTTGCAAAGTTGGTGTTCAATGATAAGAGAATGGATGATCTTTTCCAGTTGAAGATGTGGGTGTGTATCTCTGATGACTTTGACATAAGGCAGATACTTATTAAAATCATCAATTCTGCCTCTGCTTCAGCTCCAACTATTGCTCTTGCTCACCAAGAAAACATTAAAAACTTTGATATTGAGCAGCTACAAAGTCGTCTTAGACACAGGCTTTCTGGTCAGAAATATTTGCTAGTCTTGGATGACGTATGGAATGATAATCGTGCAAAATGGACACAGTTGAAAGATTTAATTAAAGTGGGTGCAGTAGGAAGCAAAATCTTGGTGACAACACGTAATAACTCAATTGCTTCAATGATGGGCACTGTTCCCTCGTACGTTTTGGAAGGTCTTTCACTGGAGAATTGTTATGCTCTGTTTAACAAATGGGCATTTAAGGAAGGCGAAGAAAAAAAATATTCAAATCTAATAGAGATTGGAAAAGAAATTGTGAAAAAATGTAGAGGGGTGCCACTAGCCGTGCGAACTTTAGGAAGTTCTCTGTTCTTAAATTTTAATTTAGAAAGGTGGGAATTTGTAAGAGACCATGGCATTTGGAACTTAAAACAAGAAAAAGATGACATTTTACCTGCTCTTAAGTTGAGTTATGACCAAATGCCTTCCTATTTGAGACACTGTTTTGCTTTCTTTTCTCTTTACCCAAAAGATTATGGCTTTACTGGTCCTGAAGTTGTTAATCTTTGGGTGTCACTTGGGTTACTTCGATCTGAGGTTGGAAGTCAAAAGCCAGAGAATGCTGCAAGACTGTATATAGACGAGTTACATTCGAGATCATTTCTTGAGGATTTTGAGGACTTTGGCAAACTTTACTATTTCAAAGTGCATGATTTGGTACATGATCTTGCCCAGTATGTTGCAAAAGAAGAGATTTTTGTGGTAGACTCAGGCACCCGAAATATACCTGAGCAAGTAAGGCATTTATCAGTTGTTGAAAATGATTCACTTAGGGATTCTTTGTTTCCCAAGTCCAGTAGATTGAGAACTATATTATTTCCTACAGATGGAGTTGGTGTTGACAGTGTAGCTCTTTTGGATGCATGGATAGCAAGATACAAATTCTTGCGTATTTTAGATTTAAGTGATTCCTCTTTTGAGACATTTCCCAATTCAATTGCTAAACTGGAGCATCTGCGAGCACTCAGTCTTGAAAATAACCGAAGGATAAAAAGACTTCCTCAATCCATATGCAAACTCCAAAATTTGCAAGCTTTGACTTTGAGAGGATGTGTGGAGCTTGAAACATTGCCTAAAGGATTCGGGATGTTAATCAGCCTTCGAAAATTGTTTATCACCACAAAACAGTCTATTCTACCAGAGGATGAATTTGCAAGCTTGGTCAATCTTAATACTTTGAGTTTTGAATTTTGTGACAATTTGATGTTTCTGTTCCGAGGGGCACAACAATTCAAATCCCTTGAAGTTTTGCTTGTTCAATCATGTAGGAGTCTAGAGTCCTTCCCTTTTCATATTCTCCCTAAACTGGAGGTTCTGTTTGTCATAAGGTGTGAGATGCTAAATCTGTCCTTGAACTGTGAAAACCCCATCGAGAGATTGAGGATGAAGTTTCTGCATATTGAGGAATGTCCAAGGCAACAGACATTGCCTCAATGGATTGAAGGAGCTGCAGAAACTTTGCAGACGTTGTTAATTTCAAATCTGCATAGTCTTGAGATGCTTCCTGAGTGGCTTACAGCAATGACTCATCTTAAGATGCTTCATATTGTTAACTGTCCTCAGCTGTTGTATCTCCCCAGTGACATGCATCGCCTCGGTGCCCTTGAAGATTTGACCATAGATGGTTGTTCTGAATTGTGTCGAAAATGTGAACCACAATCTGGGGAGTACTGGTCCTTCATTGCTCACATCAAACACCTTTCCATTGGAGAAACAAGAGAAGGGAAACTCCTCTTCCAAATGCAGAAGCAGATTCGATTGAAATTGCAGGATTTGAAGAATTAA 2652 0.394 MVECFVYDITESLLSKLASYVYEEASRAYGVYNDLRGIKDTLSIVKGVLLDAEEKKEQNHGLREWLRQIRNVCFDAEDVLDGLDCQNLRKQVLKASGNTRMKVDHFFSSSNSLVFRFRMAHQIKHVRCRLDKIAADGNKFGLERIDVDNRLVERREMTYSHVDASGVIGRESDREKIIKILMQPHPNGDGYGDQSVCVIPIVGIGGLGKTTLAKLVFNDKRMDDLFQLKMWVCISDDFDIRQILIKIINSASASAPTIALAHQENIKNFDIEQLQSRLRHRLSGQKYLLVLDDVWNDNRAKWTQLKDLIKVGAVGSKILVTTRNNSIASMMGTVPSYVLEGLSLENCYALFNKWAFKEGEEKKYSNLIEIGKEIVKKCRGVPLAVRTLGSSLFLNFNLERWEFVRDHGIWNLKQEKDDILPALKLSYDQMPSYLRHCFAFFSLYPKDYGFTGPEVVNLWVSLGLLRSEVGSQKPENAARLYIDELHSRSFLEDFEDFGKLYYFKVHDLVHDLAQYVAKEEIFVVDSGTRNIPEQVRHLSVVENDSLRDSLFPKSSRLRTILFPTDGVGVDSVALLDAWIARYKFLRILDLSDSSFETFPNSIAKLEHLRALSLENNRRIKRLPQSICKLQNLQALTLRGCVELETLPKGFGMLISLRKLFITTKQSILPEDEFASLVNLNTLSFEFCDNLMFLFRGAQQFKSLEVLLVQSCRSLESFPFHILPKLEVLFVIRCEMLNLSLNCENPIERLRMKFLHIEECPRQQTLPQWIEGAAETLQTLLISNLHSLEMLPEWLTAMTHLKMLHIVNCPQLLYLPSDMHRLGALEDLTIDGCSELCRKCEPQSGEYWSFIAHIKHLSIGETREGKLLFQMQKQIRLKLQDLKN 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03049 883 Pfam Rx N-terminal domain 11 100 IPR041118 -
Vimu6g03049 883 Gene3D - 426 515 IPR036388 -
Vimu6g03049 883 Pfam NB-ARC domain 193 428 IPR002182 GO:0043531
Vimu6g03049 883 SUPERFAMILY L domain-like 504 856 - -
Vimu6g03049 883 FunFam Probable disease resistance protein At1g61300 150 335 - -
Vimu6g03049 883 Gene3D - 150 336 IPR027417 -
Vimu6g03049 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 440 IPR027417 -
Vimu6g03049 883 PRINTS Disease resistance protein signature 378 392 - -
Vimu6g03049 883 PRINTS Disease resistance protein signature 281 295 - -
Vimu6g03049 883 PRINTS Disease resistance protein signature 627 643 - -
Vimu6g03049 883 PRINTS Disease resistance protein signature 198 213 - -
Vimu6g03049 883 Gene3D - 342 425 IPR042197 -
Vimu6g03049 883 PANTHER DISEASE RESISTANCE PROTEIN RP 55 811 IPR044974 GO:0006952
Vimu6g03049 883 CDD RX-CC_like 12 134 IPR038005 -
Vimu6g03049 883 Pfam Leucine rich repeat 585 640 IPR001611 GO:0005515
Vimu6g03049 883 Gene3D Ribonuclease Inhibitor 520 883 IPR032675 -
Vimu6g03049 883 Gene3D - 10 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03049 Vimu-Chr6 26883461 26886793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03049 199 835 WRKY Transcription Factor Family AT5G45050 23.238 1.43e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03049 - - gmx:100794422 1402.88