Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03039 ATGATGATGGCCGAATCATTTCTCTTCAGCATCGCCGACTCACTCATAGCAAAGCTTGCGTCTCAGCTTTATGAAGAAGCTTCTCGGGTGATGGGTTTGTACCATCATCTGCAAGAGTTTACAAGCACTCTCTCATTAGTCAAAGCTGTGTTGTTGGATGCTGAGCAAAAGCAGGAGCACAACCATGAGCTGCGGGAATGGCTGAGGCAGCTCAAACGTGTCTTCTCCGATGCCCAAGATGTGCTGGATGAATTTGAGTGCCAAACACTGCAAAATCAAGTTGTCAAAGCTTATGGTACCACCAAAACCAAGGTTAGTCGCTTTTTCTCAAGTTCTAATCCACTAGTTTTTCGTTACAAGATGGCTCAACAAATTAAAAATATCAGCAACAGACTAAACAAGATTGCAGCTGATAGGCATAAGTTTGGTCTACAAACAATTGATGTTGACACGCGTGTTGTGCATCGGAGAGAGATGACACACTCCCATGTGAGGGATTCAGATGTAATTGGAAGGGAACATGACAAAAGAAAGATCATACATGTTTTGACGCAGAAGAATCCCATTGATATTGATAAAAATATCTTTGTTATGCCCATTGTGGGGATGGGAGGTTTAGGAAAGACCACACTTGCAAAGTTTGTGTTTAATGATGACAGAATAGACGAGTGTTTCCCATTGAAGATGTGGGTGTGTGTTTCTGAAGACTTTGACATTAAGCAAATGATGGTTAGAATTATCAATTCTGCTAACGATTCTGCTTCACACTCTCATGCTACTGATTTCCAACAGAATTTGAACATACTAGACATGGAGCAACTGCAAAATCAATTGAGAAACAAACTTGTTGGTAAAAAGTTCTTACTCGTCTTGGACGATGTATGGAATGAAGACCGCGTTAAGTGGGTTGAGTTGAGAACTTTAATACAAGTAGGTGCTGCTGCAGGAAGTGCAGTTCTAGTGACTACTCGTAGTCACTCCATTGCATCCTTGATGGGCACGGTTTCCTCTCACATTTTACAAGGTCTTTCTTTGGAGGATTCAGTGTCTCTGTTTGTCAAATGGGCATTTAAAGAAGGAGAAGAGGAAAATTATCCTCATTTGATAAATATTGGCATAGATATTGTGAAAAAATGCAGCGGGGTTCCATTGGCAGTGAGAACTATAGGGAGTTTATTATTTTCCAAATTTGAAGCAAAGGAGTGGAAATATGTGAGAGACAGTGAAATTTGGAATTTGCCACAGAAAAAAGAGGATATATTACCAACACTTAAATTAAGTTATGATCTTATGCCATCCTATTTGAGGCAATGCTTTGCTTTGTTTTCCCTTTACCCAAAGGATTACAAATTCGTTAATTTGGAAGTAATTACGCTTTGGGGTGCACTCGGACTCCTTCGGTCTCTGAAAAAGAATATGACGCAAGAAGATGTTGCCAATCAGTATTTGTATGAACTACAGTCAAGATCTTTTATTCAAGATTTTGTCAGCTATGGAACAGCTTATACATTTCAAATACATGATTTGGTGCATGATCTAGCCCTGTTTGTTGCAAAAGATGAGTGTCTACTTGTAAATTCCCACATTCGAAGTATACCTGAGAGTATTCGTCATGTGTCATTTGTTGAAAACGATTTGGATGGCAATTCAATCAGTTCAAAATCAGTAGGTGTGAGAACCATTCTCTTTCCTAAGGATGGTGTGGGTGCCAAGAGTGAAGCTTTCTTTACATTGGTTTCAAGGTACAAATACTTGCATATTTTGAATCTAAGTTATTCTTCAGTTGAAACTTTGCCTGATTTCATTGGGAAGTTAAAACATTTGAGATCTCTCTGTCTTTATAATAATAAGAAAATCAGGGGACTCCCTGATTCTATTTGTGAGCTTCAAAGTTTGCAAGAGTTGGACCTTGGTGGATGCATGGAGCTGGAAGCATTACCCAAAGGACTAAGAAAATTGATCAGTCTTCGAGATTTTGTCATAACCACAAAGCAAGCTGTTTTGCCCGAGAATGACATTGCAAACTTGAGCTCTCTTCAGTATTTGACTATTCAATATTGTGATAATGTGGAGTCTTTATTCTCAGGGATAGAACTTCATTATCTGAAAGCATTGAGTGTTATTAGCTGTAAGAGACTAGAATCTTTGTCACTTGACAGTAAGCATTTTCCTGCAATAGAGACGTTGTGTATTGGGAACTGTGACAAATTAGAATTGTCCAAGGGTCATGAAGGCCAGAAGTTCTTCTTAAAGTTAAAAACAATACACTTTCTTTCACTGCCACAGCTACGGACATTGCCTCATTGGCTTCAAGGATCTATTAAAACACTGCTATCATTGAGACTAGAGCACTGCTCCAATCTTGAGGTGCTTCCCGATTGGCTGCCAATGCTAACTTGTTTGAAAGCACTTGACATCAAAGGTTGCCCGAAATTGCATTCTCTGCCAGATGGCATCAATTACCTCTCTGCCCTTGAACGTTTGGAAATCGTTGTCTGTCCGGAATTATTCAGAAAATTCACGCTGCAAGTCAGAGAGCATTGGGACCAAATGTCACACATCAAACGGATTAGCATTCTTGAAAGTAAATAG 2592 0.3943 MMMAESFLFSIADSLIAKLASQLYEEASRVMGLYHHLQEFTSTLSLVKAVLLDAEQKQEHNHELREWLRQLKRVFSDAQDVLDEFECQTLQNQVVKAYGTTKTKVSRFFSSSNPLVFRYKMAQQIKNISNRLNKIAADRHKFGLQTIDVDTRVVHRREMTHSHVRDSDVIGREHDKRKIIHVLTQKNPIDIDKNIFVMPIVGMGGLGKTTLAKFVFNDDRIDECFPLKMWVCVSEDFDIKQMMVRIINSANDSASHSHATDFQQNLNILDMEQLQNQLRNKLVGKKFLLVLDDVWNEDRVKWVELRTLIQVGAAAGSAVLVTTRSHSIASLMGTVSSHILQGLSLEDSVSLFVKWAFKEGEEENYPHLINIGIDIVKKCSGVPLAVRTIGSLLFSKFEAKEWKYVRDSEIWNLPQKKEDILPTLKLSYDLMPSYLRQCFALFSLYPKDYKFVNLEVITLWGALGLLRSLKKNMTQEDVANQYLYELQSRSFIQDFVSYGTAYTFQIHDLVHDLALFVAKDECLLVNSHIRSIPESIRHVSFVENDLDGNSISSKSVGVRTILFPKDGVGAKSEAFFTLVSRYKYLHILNLSYSSVETLPDFIGKLKHLRSLCLYNNKKIRGLPDSICELQSLQELDLGGCMELEALPKGLRKLISLRDFVITTKQAVLPENDIANLSSLQYLTIQYCDNVESLFSGIELHYLKALSVISCKRLESLSLDSKHFPAIETLCIGNCDKLELSKGHEGQKFFLKLKTIHFLSLPQLRTLPHWLQGSIKTLLSLRLEHCSNLEVLPDWLPMLTCLKALDIKGCPKLHSLPDGINYLSALERLEIVVCPELFRKFTLQVREHWDQMSHIKRISILESK 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03039 863 SUPERFAMILY L domain-like 506 836 - -
Vimu6g03039 863 Pfam Rx N-terminal domain 14 102 IPR041118 -
Vimu6g03039 863 Gene3D - 12 126 - -
Vimu6g03039 863 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 441 IPR027417 -
Vimu6g03039 863 Gene3D - 150 339 IPR027417 -
Vimu6g03039 863 Coils Coil 68 88 - -
Vimu6g03039 863 PANTHER DISEASE RESISTANCE PROTEIN RP 64 833 IPR044974 GO:0006952
Vimu6g03039 863 Gene3D - 428 515 IPR036388 -
Vimu6g03039 863 Gene3D Ribonuclease Inhibitor 743 856 IPR032675 -
Vimu6g03039 863 Gene3D Ribonuclease Inhibitor 521 742 IPR032675 -
Vimu6g03039 863 PRINTS Disease resistance protein signature 627 643 - -
Vimu6g03039 863 PRINTS Disease resistance protein signature 281 295 - -
Vimu6g03039 863 PRINTS Disease resistance protein signature 379 393 - -
Vimu6g03039 863 PRINTS Disease resistance protein signature 197 212 - -
Vimu6g03039 863 Pfam NB-ARC domain 173 429 IPR002182 GO:0043531
Vimu6g03039 863 Gene3D - 342 427 IPR042197 -
Vimu6g03039 863 Pfam Leucine rich repeat 585 640 IPR001611 GO:0005515
Vimu6g03039 863 CDD RX-CC_like 4 136 IPR038005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03039 Vimu-Chr6 26825845 26828436 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03039 180 401 WRKY Transcription Factor Family AT5G45050 26.293 2.30e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03039 - - gmx:100805394 1204.5