Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03038 ATGGAAGCTCTATGCTTGTTAAACATTCTGCTAGCTTGGTGTATGTTATGTTTTGAACTTGTTGGTGCCGAGCTTCAGGAGCAAGCTATATTACAGGCCATCAACCAAGAGCTCAGAGTCCCTGGATGGGGGGATGCCAACAACTCAGATTACTGCACTTGGCAGGGTGTCAACTGTGGTAACCACTCAATGGTGGAGAGCTTGGATCTGTCTCACCGGAATCTTCGAGGTAATGTAACTTTAATGTCTGAGCTCAAAGCATTGAAGCGGCTTGATCTTTCAAATAATAACTTTGATGGATCCATTCCTCCTTCTTTTGGAAATTTATCTGATCTTGAAGTTTTGGATTTGTCTTCAAATAAGATCCAAGGTTCAATTCCACCTCAATTGGGTGGTCTCAGAAACCTCAAATCATTGAACCTTTCCAATAATGTGCTTGAGGGAGAAATACCAATGGAACTTCAGGGCTTAGAGAAATTGCAAGATTTTCAAATTTCTAGTAATCATTTGAGTGGTCTTATACCTTCCTGGGTGGGAAATTTAACTAATCTGAGGCTTTTCACTGCTTATGAGAACCGTTTAGATGGCAGGATTCCAGATGATCTAGGCTCTATTTCTGAGCTTCAAATACTTAACTTGCACTCTAACCAACTTGAAGGTCCAATACCAGCTAGCATTTTTGTTCCAGGGAAGCTGGAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGAGAACTTCCTGAGGAAATTGGGAATTGCAAAGCCCTTTCCAGCGTTCGAATTGGAAACAACCATCTAGGGGGTACCATTCCTAAGACCATTGGAAATCTTAGTAGCCTAACCTACTTTGAAGCTGATAATAATAATCTTTCTGGTGAGGTTGTGGCAGAATTTTCTCAGTGTTCTAATCTTACTCTCTTGAATTTGGCTTCAAATGGATTTACTGGAACAATTCCCCCAGATTTTGGACAACTTATGAATCTTCAAGAATTAATTCTTTCTGGAAATAGCCTATTTGGCGATATTCCAATATCAATTCTGAGTTGCAAAAATCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATACCAAATGAAATCTGCAATATCACCCGGTTGCAGTACTTGCTGTTGGATCAGAATTTTATAAGAGGAGAGATCCCCCATGAAATTGGTAATTGTGCAAAACTTCTTGAATTACAATTGGGCAGTAATATTTTGACTGGAACTATTCCTCCTGAGATTGGGCGCATTAGGAACTTACAGATAGCTTTAAATTTGAGCTTCAATCATCTTCATGGACTTCTGCCCCCTGAATTGGGAAAACTGGACAAACTTGTTTCACTGGATGTTTCAAACAATCGGCTATCGGGTAATATCCCACCTGAACTTAAGGGAATGTTGAGCTTGATAGAGGTGAACTTCTCAAATAATCTGTTAGCGGGCTTGGTACCAACATTTGTACCATTCCAGAAGAGTCCTAGTTCAAGTTTTTTGGGCAACAAAGGGCTTTGTGGAGAGCCTATAAACCCTTCATGTGGAACCCTTTATGATGATCACAAGGCTTACCATCATCGGGTTTCTTACAGAATCATACTAGCTGTAATTGGTTCTGGTTTGGCTGTTTTTATGTCAGTAACTATAGTTGTCTTGCTGTTTATGATCAGAGAGAGGCAAGAAAAAGTAGCCAAAGATGCTGGGATTGTTGATGAGAGCATCAATGAAAACCCAACTATAATTGCAGGGACTGTTTTTGTTGATAATCTCAAACAAGCAGTAGACCTTGATGCCGTTGTTAAAGCAACTCTGAAAGACTCTAATAAGCTCAGCAGCGGGACTTTCAGCACAGTTTACAAGGCAATCATGCCTTCTGGGGTGGTTTTATCTGTTAGGAGATTGAAGTCTGTAGACAAGACAATAATCCACCACCAGAACAAGATGATTAGAGAACTTGAAAGACTGAGCAAAGTTTGTCATGATAATCTTGTGCGTCCCATTGGCTATGTCATTTATGAAGATGTTGCTCTTCTCTTGCATCATTATTTTCCAAACGGAACACTGGCTCAGCTTCTCCATGAATCTACCCGGAAACCTGAATATCAACCTGACTGGCCCTCAAGATTGTCCATTGCCATTGGCGTGGCAGAAGGTTTGGCTTTCCTTCATCATGTGGCAATAATCCATCTTGACATTTCTTCTGGCAATGTTCTCTTGGATGCAAATTTCAAACCATTAGTTGGGGAGATAGAGATTTCAAAACTTCTGGATCCAACCAAAGGCACTGCAAGTATTAGTGCAGTTGCTGGTTCCTTCGGTTACATACCTCCAGAATATGCATATACTATGCAAGTGACAGCACCAGGAAATGTTTATAGCTACGGTGTTGTTCTGTTGGAGATCCTCACAACTAGATTACCAGTTGATGAGGATTTTGGTGAAGGTGTAGATTTGGTGAAATGGGTTCACAGTGCTCCAGTGAGAGGAGAAACTCCAGAGCAGATATTGGATGCCAGGCTTAGCACAGTTTCCTTTAGCTGGAGGAAAGAAATGCTTGCTGCTTTGAAGGTTGCATTGCTGTGTACCGACAACACACCAGCCAAACGACCGAAAATGAAGAATGTAGTGGAAATGCTACGGGAAATAAAGCAAAACTGA 2664 0.4084 MEALCLLNILLAWCMLCFELVGAELQEQAILQAINQELRVPGWGDANNSDYCTWQGVNCGNHSMVESLDLSHRNLRGNVTLMSELKALKRLDLSNNNFDGSIPPSFGNLSDLEVLDLSSNKIQGSIPPQLGGLRNLKSLNLSNNVLEGEIPMELQGLEKLQDFQISSNHLSGLIPSWVGNLTNLRLFTAYENRLDGRIPDDLGSISELQILNLHSNQLEGPIPASIFVPGKLEVLVLTQNNFSGELPEEIGNCKALSSVRIGNNHLGGTIPKTIGNLSSLTYFEADNNNLSGEVVAEFSQCSNLTLLNLASNGFTGTIPPDFGQLMNLQELILSGNSLFGDIPISILSCKNLNKLDISNNRFNGTIPNEICNITRLQYLLLDQNFIRGEIPHEIGNCAKLLELQLGSNILTGTIPPEIGRIRNLQIALNLSFNHLHGLLPPELGKLDKLVSLDVSNNRLSGNIPPELKGMLSLIEVNFSNNLLAGLVPTFVPFQKSPSSSFLGNKGLCGEPINPSCGTLYDDHKAYHHRVSYRIILAVIGSGLAVFMSVTIVVLLFMIRERQEKVAKDAGIVDESINENPTIIAGTVFVDNLKQAVDLDAVVKATLKDSNKLSSGTFSTVYKAIMPSGVVLSVRRLKSVDKTIIHHQNKMIRELERLSKVCHDNLVRPIGYVIYEDVALLLHHYFPNGTLAQLLHESTRKPEYQPDWPSRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEDFGEGVDLVKWVHSAPVRGETPEQILDARLSTVSFSWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLREIKQN 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03038 887 Gene3D Phosphorylase Kinase; domain 1 574 684 - -
Vimu6g03038 887 CDD STKc_IRAK 612 884 - -
Vimu6g03038 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 685 887 - -
Vimu6g03038 887 Gene3D Transferase(Phosphotransferase) domain 1 685 887 - -
Vimu6g03038 887 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 129 222 - -
Vimu6g03038 887 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Vimu6g03038 887 Pfam Leucine rich repeat 327 384 IPR001611 GO:0005515
Vimu6g03038 887 SMART LRR_typ_2 133 156 IPR003591 -
Vimu6g03038 887 SMART LRR_typ_2 446 469 IPR003591 -
Vimu6g03038 887 SMART LRR_typ_2 157 180 IPR003591 -
Vimu6g03038 887 SMART LRR_typ_2 373 397 IPR003591 -
Vimu6g03038 887 SMART LRR_typ_2 109 132 IPR003591 -
Vimu6g03038 887 SMART LRR_typ_2 85 108 IPR003591 -
Vimu6g03038 887 SMART LRR_typ_2 205 229 IPR003591 -
Vimu6g03038 887 SMART LRR_typ_2 325 349 IPR003591 -
Vimu6g03038 887 SUPERFAMILY Protein kinase-like (PK-like) 606 884 IPR011009 -
Vimu6g03038 887 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 225 519 - -
Vimu6g03038 887 Gene3D Ribonuclease Inhibitor 229 518 IPR032675 -
Vimu6g03038 887 Gene3D Ribonuclease Inhibitor 60 228 IPR032675 -
Vimu6g03038 887 PRINTS Leucine-rich repeat signature 109 122 - -
Vimu6g03038 887 PRINTS Leucine-rich repeat signature 88 101 - -
Vimu6g03038 887 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 576 684 - -
Vimu6g03038 887 SUPERFAMILY RNI-like 174 485 - -
Vimu6g03038 887 FunFam Leucine-rich repeat receptor-like kinase 27 128 - -
Vimu6g03038 887 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 263 882 - -
Vimu6g03038 887 Pfam Protein tyrosine and serine/threonine kinase 609 881 IPR001245 GO:0004672|GO:0006468
Vimu6g03038 887 ProSiteProfiles Protein kinase domain profile. 606 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03038 887 ProSitePatterns Tyrosine protein kinases specific active-site signature. 729 741 IPR008266 GO:0004672|GO:0006468
Vimu6g03038 887 SUPERFAMILY L domain-like 59 223 - -
Vimu6g03038 887 ProSiteProfiles Leucine-rich repeat profile. 111 134 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03038 Vimu-Chr6 26808182 26811105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03038 13 886 Receptor kinase-like Gene Family AT2G41820 73.251 0.0 1302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g03038 PK_Tyr_Ser-Thr 9.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03038 - - gmx:100789684 1647.48