Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu6g03038 | ATGGAAGCTCTATGCTTGTTAAACATTCTGCTAGCTTGGTGTATGTTATGTTTTGAACTTGTTGGTGCCGAGCTTCAGGAGCAAGCTATATTACAGGCCATCAACCAAGAGCTCAGAGTCCCTGGATGGGGGGATGCCAACAACTCAGATTACTGCACTTGGCAGGGTGTCAACTGTGGTAACCACTCAATGGTGGAGAGCTTGGATCTGTCTCACCGGAATCTTCGAGGTAATGTAACTTTAATGTCTGAGCTCAAAGCATTGAAGCGGCTTGATCTTTCAAATAATAACTTTGATGGATCCATTCCTCCTTCTTTTGGAAATTTATCTGATCTTGAAGTTTTGGATTTGTCTTCAAATAAGATCCAAGGTTCAATTCCACCTCAATTGGGTGGTCTCAGAAACCTCAAATCATTGAACCTTTCCAATAATGTGCTTGAGGGAGAAATACCAATGGAACTTCAGGGCTTAGAGAAATTGCAAGATTTTCAAATTTCTAGTAATCATTTGAGTGGTCTTATACCTTCCTGGGTGGGAAATTTAACTAATCTGAGGCTTTTCACTGCTTATGAGAACCGTTTAGATGGCAGGATTCCAGATGATCTAGGCTCTATTTCTGAGCTTCAAATACTTAACTTGCACTCTAACCAACTTGAAGGTCCAATACCAGCTAGCATTTTTGTTCCAGGGAAGCTGGAAGTTCTGGTTCTCACCCAGAATAATTTTAGTGGAGAACTTCCTGAGGAAATTGGGAATTGCAAAGCCCTTTCCAGCGTTCGAATTGGAAACAACCATCTAGGGGGTACCATTCCTAAGACCATTGGAAATCTTAGTAGCCTAACCTACTTTGAAGCTGATAATAATAATCTTTCTGGTGAGGTTGTGGCAGAATTTTCTCAGTGTTCTAATCTTACTCTCTTGAATTTGGCTTCAAATGGATTTACTGGAACAATTCCCCCAGATTTTGGACAACTTATGAATCTTCAAGAATTAATTCTTTCTGGAAATAGCCTATTTGGCGATATTCCAATATCAATTCTGAGTTGCAAAAATCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGGACAATACCAAATGAAATCTGCAATATCACCCGGTTGCAGTACTTGCTGTTGGATCAGAATTTTATAAGAGGAGAGATCCCCCATGAAATTGGTAATTGTGCAAAACTTCTTGAATTACAATTGGGCAGTAATATTTTGACTGGAACTATTCCTCCTGAGATTGGGCGCATTAGGAACTTACAGATAGCTTTAAATTTGAGCTTCAATCATCTTCATGGACTTCTGCCCCCTGAATTGGGAAAACTGGACAAACTTGTTTCACTGGATGTTTCAAACAATCGGCTATCGGGTAATATCCCACCTGAACTTAAGGGAATGTTGAGCTTGATAGAGGTGAACTTCTCAAATAATCTGTTAGCGGGCTTGGTACCAACATTTGTACCATTCCAGAAGAGTCCTAGTTCAAGTTTTTTGGGCAACAAAGGGCTTTGTGGAGAGCCTATAAACCCTTCATGTGGAACCCTTTATGATGATCACAAGGCTTACCATCATCGGGTTTCTTACAGAATCATACTAGCTGTAATTGGTTCTGGTTTGGCTGTTTTTATGTCAGTAACTATAGTTGTCTTGCTGTTTATGATCAGAGAGAGGCAAGAAAAAGTAGCCAAAGATGCTGGGATTGTTGATGAGAGCATCAATGAAAACCCAACTATAATTGCAGGGACTGTTTTTGTTGATAATCTCAAACAAGCAGTAGACCTTGATGCCGTTGTTAAAGCAACTCTGAAAGACTCTAATAAGCTCAGCAGCGGGACTTTCAGCACAGTTTACAAGGCAATCATGCCTTCTGGGGTGGTTTTATCTGTTAGGAGATTGAAGTCTGTAGACAAGACAATAATCCACCACCAGAACAAGATGATTAGAGAACTTGAAAGACTGAGCAAAGTTTGTCATGATAATCTTGTGCGTCCCATTGGCTATGTCATTTATGAAGATGTTGCTCTTCTCTTGCATCATTATTTTCCAAACGGAACACTGGCTCAGCTTCTCCATGAATCTACCCGGAAACCTGAATATCAACCTGACTGGCCCTCAAGATTGTCCATTGCCATTGGCGTGGCAGAAGGTTTGGCTTTCCTTCATCATGTGGCAATAATCCATCTTGACATTTCTTCTGGCAATGTTCTCTTGGATGCAAATTTCAAACCATTAGTTGGGGAGATAGAGATTTCAAAACTTCTGGATCCAACCAAAGGCACTGCAAGTATTAGTGCAGTTGCTGGTTCCTTCGGTTACATACCTCCAGAATATGCATATACTATGCAAGTGACAGCACCAGGAAATGTTTATAGCTACGGTGTTGTTCTGTTGGAGATCCTCACAACTAGATTACCAGTTGATGAGGATTTTGGTGAAGGTGTAGATTTGGTGAAATGGGTTCACAGTGCTCCAGTGAGAGGAGAAACTCCAGAGCAGATATTGGATGCCAGGCTTAGCACAGTTTCCTTTAGCTGGAGGAAAGAAATGCTTGCTGCTTTGAAGGTTGCATTGCTGTGTACCGACAACACACCAGCCAAACGACCGAAAATGAAGAATGTAGTGGAAATGCTACGGGAAATAAAGCAAAACTGA | 2664 | 0.4084 | MEALCLLNILLAWCMLCFELVGAELQEQAILQAINQELRVPGWGDANNSDYCTWQGVNCGNHSMVESLDLSHRNLRGNVTLMSELKALKRLDLSNNNFDGSIPPSFGNLSDLEVLDLSSNKIQGSIPPQLGGLRNLKSLNLSNNVLEGEIPMELQGLEKLQDFQISSNHLSGLIPSWVGNLTNLRLFTAYENRLDGRIPDDLGSISELQILNLHSNQLEGPIPASIFVPGKLEVLVLTQNNFSGELPEEIGNCKALSSVRIGNNHLGGTIPKTIGNLSSLTYFEADNNNLSGEVVAEFSQCSNLTLLNLASNGFTGTIPPDFGQLMNLQELILSGNSLFGDIPISILSCKNLNKLDISNNRFNGTIPNEICNITRLQYLLLDQNFIRGEIPHEIGNCAKLLELQLGSNILTGTIPPEIGRIRNLQIALNLSFNHLHGLLPPELGKLDKLVSLDVSNNRLSGNIPPELKGMLSLIEVNFSNNLLAGLVPTFVPFQKSPSSSFLGNKGLCGEPINPSCGTLYDDHKAYHHRVSYRIILAVIGSGLAVFMSVTIVVLLFMIRERQEKVAKDAGIVDESINENPTIIAGTVFVDNLKQAVDLDAVVKATLKDSNKLSSGTFSTVYKAIMPSGVVLSVRRLKSVDKTIIHHQNKMIRELERLSKVCHDNLVRPIGYVIYEDVALLLHHYFPNGTLAQLLHESTRKPEYQPDWPSRLSIAIGVAEGLAFLHHVAIIHLDISSGNVLLDANFKPLVGEIEISKLLDPTKGTASISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRLPVDEDFGEGVDLVKWVHSAPVRGETPEQILDARLSTVSFSWRKEMLAALKVALLCTDNTPAKRPKMKNVVEMLREIKQN | 887 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu6g03038 | 887 | Gene3D | Phosphorylase Kinase; domain 1 | 574 | 684 | - | - | |
Vimu6g03038 | 887 | CDD | STKc_IRAK | 612 | 884 | - | - | |
Vimu6g03038 | 887 | FunFam | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 | 685 | 887 | - | - | |
Vimu6g03038 | 887 | Gene3D | Transferase(Phosphotransferase) domain 1 | 685 | 887 | - | - | |
Vimu6g03038 | 887 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 129 | 222 | - | - | |
Vimu6g03038 | 887 | Pfam | Leucine rich repeat | 87 | 146 | IPR001611 | GO:0005515 | |
Vimu6g03038 | 887 | Pfam | Leucine rich repeat | 327 | 384 | IPR001611 | GO:0005515 | |
Vimu6g03038 | 887 | SMART | LRR_typ_2 | 133 | 156 | IPR003591 | - | |
Vimu6g03038 | 887 | SMART | LRR_typ_2 | 446 | 469 | IPR003591 | - | |
Vimu6g03038 | 887 | SMART | LRR_typ_2 | 157 | 180 | IPR003591 | - | |
Vimu6g03038 | 887 | SMART | LRR_typ_2 | 373 | 397 | IPR003591 | - | |
Vimu6g03038 | 887 | SMART | LRR_typ_2 | 109 | 132 | IPR003591 | - | |
Vimu6g03038 | 887 | SMART | LRR_typ_2 | 85 | 108 | IPR003591 | - | |
Vimu6g03038 | 887 | SMART | LRR_typ_2 | 205 | 229 | IPR003591 | - | |
Vimu6g03038 | 887 | SMART | LRR_typ_2 | 325 | 349 | IPR003591 | - | |
Vimu6g03038 | 887 | SUPERFAMILY | Protein kinase-like (PK-like) | 606 | 884 | IPR011009 | - | |
Vimu6g03038 | 887 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 225 | 519 | - | - | |
Vimu6g03038 | 887 | Gene3D | Ribonuclease Inhibitor | 229 | 518 | IPR032675 | - | |
Vimu6g03038 | 887 | Gene3D | Ribonuclease Inhibitor | 60 | 228 | IPR032675 | - | |
Vimu6g03038 | 887 | PRINTS | Leucine-rich repeat signature | 109 | 122 | - | - | |
Vimu6g03038 | 887 | PRINTS | Leucine-rich repeat signature | 88 | 101 | - | - | |
Vimu6g03038 | 887 | FunFam | Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 | 576 | 684 | - | - | |
Vimu6g03038 | 887 | SUPERFAMILY | RNI-like | 174 | 485 | - | - | |
Vimu6g03038 | 887 | FunFam | Leucine-rich repeat receptor-like kinase | 27 | 128 | - | - | |
Vimu6g03038 | 887 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 263 | 882 | - | - | |
Vimu6g03038 | 887 | Pfam | Protein tyrosine and serine/threonine kinase | 609 | 881 | IPR001245 | GO:0004672|GO:0006468 | |
Vimu6g03038 | 887 | ProSiteProfiles | Protein kinase domain profile. | 606 | 887 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vimu6g03038 | 887 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 729 | 741 | IPR008266 | GO:0004672|GO:0006468 | |
Vimu6g03038 | 887 | SUPERFAMILY | L domain-like | 59 | 223 | - | - | |
Vimu6g03038 | 887 | ProSiteProfiles | Leucine-rich repeat profile. | 111 | 134 | IPR001611 | GO:0005515 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu6g03038 | Vimu-Chr6 | 26808182 | 26811105 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu6g03038 | 13 | 886 | Receptor kinase-like Gene Family | AT2G41820 | 73.251 | 0.0 | 1302 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-XI-1 | Vimu6g03038 | PK_Tyr_Ser-Thr | 9.6e-27 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu6g03038 | - | - | gmx:100789684 | 1647.48 |