Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03031 ATGGGGACTCCGGAATTTCCAAATCTCGGCAAGCATTGTTCTGTTTCCGATTGCAGGCAGCTTGATTTCTTGCCCTTCACATGCGATCGCTGTGATCAGATATATTGTTTGGAGCACCGAGGTTATATTGAGCACAAGTGCACAAAGCCCAACAAAGAAGATGTCAAAGTTGTCATATGTCCCCTTTGCGCAAAAGGAGTTCGCCTCATTCCAGATCAAGATCCCAACATAGCTTGGGACCATCATGTTAACATTGATTGTGATCCATCAAATTACCAAAAAGTGACAAAGAAGAGAAAATGCCCTGCCCCTGGATGCAGAGAGGTATTGGTATTCTCCAACACAATCAAGTGCAGGGATTGCCTGGAAGACCATTGTTTGAAGCACCGGTTTGGCCCTGATCACAAATGTTCTGGTCCCAAAAAGTTAGAGACAAGTTTTTCATTCATGAGTTTATTTAATACGATTAAAAAAGAGGAGCCAAAGCCCAATTTAACTTCAACAGCATCATCTAAGTGGACTTCAAGCTTTCTCAGCGTGGCTTCTAACATTCGTGCCTCAGCTGAAGCGAGCATGTCAAAATTGGGCAATGAAATTAACCAAGTTTGGCTGGCAGCAAGGGATAGTGTGGGACCGAACAGTGGCAGTGGAAATAAAAATGACCTTCAAGAGGAATCTTGCCCTCAATGTGGTGTAAAGTTTTCCTCTGCGATTTCTTTGGTGGATCATGTGCAACAAGTTCATGAAAGCAATGGGAAACCATTAGGGGTTAAGAAGATTGAGGCATGCCCCAAGTGTAGTGGAGGGTTTGTTGACCCGGTATCCCTAGTGGAGCATGTTGAGAGGGATCATGGTGGTGGTTATGGAGCATAG 873 0.4433 MGTPEFPNLGKHCSVSDCRQLDFLPFTCDRCDQIYCLEHRGYIEHKCTKPNKEDVKVVICPLCAKGVRLIPDQDPNIAWDHHVNIDCDPSNYQKVTKKRKCPAPGCREVLVFSNTIKCRDCLEDHCLKHRFGPDHKCSGPKKLETSFSFMSLFNTIKKEEPKPNLTSTASSKWTSSFLSVASNIRASAEASMSKLGNEINQVWLAARDSVGPNSGSGNKNDLQEESCPQCGVKFSSAISLVDHVQQVHESNGKPLGVKKIEACPKCSGGFVDPVSLVEHVERDHGGGYGA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03031 290 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Vimu6g03031 290 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Vimu6g03031 290 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Vimu6g03031 290 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Vimu6g03031 290 ProSitePatterns Zinc finger C2H2 type domain signature. 263 284 IPR013087 -
Vimu6g03031 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 253 IPR013087 -
Vimu6g03031 290 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Vimu6g03031 290 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Vimu6g03031 290 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Vimu6g03031 290 ProSitePatterns Zinc finger C2H2 type domain signature. 227 248 IPR013087 -
Vimu6g03031 290 Gene3D - 86 164 IPR035896 -
Vimu6g03031 290 Gene3D - 2 65 IPR035896 -
Vimu6g03031 290 Pfam zinc-finger C2H2-type 227 248 IPR041697 -
Vimu6g03031 290 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 251 - -
Vimu6g03031 290 Gene3D Classic Zinc Finger 225 288 - -
Vimu6g03031 290 SUPERFAMILY AN1-like Zinc finger 93 144 IPR035896 -
Vimu6g03031 290 SMART c2h2final6 261 284 IPR013087 -
Vimu6g03031 290 SMART c2h2final6 225 248 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03031 Vimu-Chr6 26775113 26777158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03031 1 290 C2H2 Transcription Factor Family AT2G41835 56.655 2.19e-108 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g03031 zf-AN1 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03031 - - gmx:100806459 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03031 6 26775113 26777158 Vimu6g03031 6 26775113 26777158 ECH
Vimu6g03031 6 26775113 26777158 Vimu3g00412 3 3988764 3991667 PCT