Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03024 ATGAAAAGGAAGACGAAGTCGCTGCGAAACAAGTTTGACCCTCTCCAAGTTAAGTTCCAACCTCTTTCCTCCTCAAACACGCGCAAAATTCATAATCATCGTCGAACCTCGTCGCCACCGAATATGGGTATCTGCTGCGCGAAGCCGTCCACGGCGGAGGAAGCGGGGAACAAGAAGGGCAAAAAGGGGAAAAAAGAGAACCCCTTCGCTATCGATTACGGGTTTAACAACAGCGCCAACGCCAACGGCTCCAAGCTCACCGTTTTGAAGTCTCCCACGGGCCGCGAGATCGAGGCCCGCTACTTGCTGGGCCGCGAGCTCGGCCGGGGCGAATTCGGCGTCACGTACCTCTGCACGGACAAAGAGAGCGGCGAGGAGCTTGCCTGCAAGTCCATTTCGAAGAAGAAGTTGAGGACCGCCATCGACATCGAGGATGTGAGGAGGGAGGTTGAGATCATGCGCCACTTGCCGCAGCATCCCAATATCGTCACCTTGAAGGACACCTATGAGGACGACAATGCCGTTCATCTCGTTATGGAGCTTTGCGAAGGTGGAGAGCTCTTCGATCGCATCGTTGCGCGTGGCCACTACACCGAACGCGCCGCCGCCGCTGTCACCAAAACCATCGTCGAAGTCGTTCAGGTTCGATCTGGTGCCTTGATCTGGTTTTTTCCACTCGGTTTTGCCTTTTTGTTGTTAGGTTTGGGTTTTGTGTTTTGTCCTATGAAACGGAGAATTGATGTGCGGGAATTGAAACCTGACCACGACCAAAAAAAGTTGGAGAACTCTGGGTTTAAGTGGGGTCTCGAGATTGAGTTTGGATACTGGTTAATCTACATCCGAGGGAGAATATGTGTGGTACTGGAGAAGAAATTGAGCAAGGTTATCTATAGCGGAGGATACTTGAGGCCTTTTACCAAAATTTTAAAATGGGATTTCATAAATGAGGTTTGCTTTGTCGCGTTTGGTTTTGATTTGTTTCGTCGAGCGTTGTTTGTTTTTCTGTTTGTGTGCTGCGGTAGCCTTTACTCTGATTTTTGTGTTGATGTGGAGATGTGCCACAAGCATGGCGTGATGCATCGGGATCTTAAGCCGGAAAACTTTCTATTTGCAAATAAGAAGGAAACCGCAGCTCTGAAGACTATAGATTTTGGGTTGTCAGTGTTCTTTAAACCAGGGGAAAGATTTAATGAGATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTGAAGCGCAATTACGGACCAGAAGTAGATATCTGGAGTGCTGGAGTAATTCTATACATCTTACTTTGTGGTGTTCCACCATTTTGGGCAGCAATCATACGATCTGTTGTTGATTTCAAAAGGGACCCATGGCCTAAAGTTTCTGATAATGCGAAAGACCTTGTGAAGAAGATGCTAGATCCTGATCCAAGGCGGCGGCTAACTGCACAGGAAGTGTTAGATCATCCGTGGTTACAAAATGCGAAGAAAGCTCCTAATGTTTCTTTAGGCGAAACAGTCAGGGCAAGGCTCAAGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGGGCTTTAAGGGTGATCGCAGAGCATTTGACAGTAGAAGAAGCTGCAGGGCTAAAAGAGGGATTCCAGCGAATGGATATAAACAACAGAGGCAAAATTAACATTGATGAACTACGAGTAGGGTTGCATAAATTAGGCCATCAAGTTCCTGATTCAGATGTCCAAATTCTTATGGAAGCTGGTGATGTAGACAGGGATGGACACCTAGATTATGGAGAGTTTGTAGCTATCTCTGTTCATCTGAGAAAGATGGGAAATGATGAGCATCTTCGAAAAGCCTTCCAATTTTTTGATGAAAACCAAAGTGGGTATATTGAGATTGAAGAACTGCGTAACGCGTTATCTGATGATGTTGAAACAAACAGTGAAGAAGTTATCAATGCAATTATGCATGATGTGGACACAGACAAGGATGGAAGAATAAGTTACGATGAATTTGCTACAATGATGAAGGCTGGGACAGATTGGAGAAAAGCATCAAGACAGTACTCGCGAGAGAGGTTTGCGAGTCTGAGTCTGACTTTGATGAGAGACGGGTCATTGCATTTAAACAATGAAAAAACGGAGGGTAGATGA 2130 0.4582 MKRKTKSLRNKFDPLQVKFQPLSSSNTRKIHNHRRTSSPPNMGICCAKPSTAEEAGNKKGKKGKKENPFAIDYGFNNSANANGSKLTVLKSPTGREIEARYLLGRELGRGEFGVTYLCTDKESGEELACKSISKKKLRTAIDIEDVRREVEIMRHLPQHPNIVTLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQVRSGALIWFFPLGFAFLLLGLGFVFCPMKRRIDVRELKPDHDQKKLENSGFKWGLEIEFGYWLIYIRGRICVVLEKKLSKVIYSGGYLRPFTKILKWDFINEVCFVAFGFDLFRRALFVFLFVCCGSLYSDFCVDVEMCHKHGVMHRDLKPENFLFANKKETAALKTIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAAIIRSVVDFKRDPWPKVSDNAKDLVKKMLDPDPRRRLTAQEVLDHPWLQNAKKAPNVSLGETVRARLKQFSVMNKLKKRALRVIAEHLTVEEAAGLKEGFQRMDINNRGKINIDELRVGLHKLGHQVPDSDVQILMEAGDVDRDGHLDYGEFVAISVHLRKMGNDEHLRKAFQFFDENQSGYIEIEELRNALSDDVETNSEEVINAIMHDVDTDKDGRISYDEFATMMKAGTDWRKASRQYSRERFASLSLTLMRDGSLHLNNEKTEGR 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03024 709 ProSiteProfiles EF-hand calcium-binding domain profile. 531 566 IPR002048 GO:0005509
Vimu6g03024 709 SUPERFAMILY EF-hand 517 694 IPR011992 -
Vimu6g03024 709 FunFam Calcium-dependent protein kinase 1 103 186 - -
Vimu6g03024 709 SUPERFAMILY Protein kinase-like (PK-like) 99 491 IPR011009 -
Vimu6g03024 709 FunFam Calcium-dependent protein kinase 7 497 672 - -
Vimu6g03024 709 Gene3D Transferase(Phosphotransferase) domain 1 339 495 - -
Vimu6g03024 709 ProSitePatterns EF-hand calcium-binding domain. 652 664 IPR018247 -
Vimu6g03024 709 Gene3D Phosphorylase Kinase; domain 1 105 181 - -
Vimu6g03024 709 ProSiteProfiles EF-hand calcium-binding domain profile. 639 674 IPR002048 GO:0005509
Vimu6g03024 709 ProSitePatterns EF-hand calcium-binding domain. 616 628 IPR018247 -
Vimu6g03024 709 Pfam EF-hand domain pair 606 669 IPR002048 GO:0005509
Vimu6g03024 709 CDD EFh 607 669 IPR002048 GO:0005509
Vimu6g03024 709 SMART serkin_6 101 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03024 709 MobiDBLite consensus disorder prediction 20 66 - -
Vimu6g03024 709 ProSitePatterns Serine/Threonine protein kinases active-site signature. 358 370 IPR008271 GO:0004672|GO:0006468
Vimu6g03024 709 CDD STKc_CAMK 100 487 - -
Vimu6g03024 709 ProSitePatterns EF-hand calcium-binding domain. 580 592 IPR018247 -
Vimu6g03024 709 FunFam calcium-dependent protein kinase 13 342 496 - -
Vimu6g03024 709 SMART efh_1 607 635 IPR002048 GO:0005509
Vimu6g03024 709 SMART efh_1 535 563 IPR002048 GO:0005509
Vimu6g03024 709 SMART efh_1 571 599 IPR002048 GO:0005509
Vimu6g03024 709 SMART efh_1 643 671 IPR002048 GO:0005509
Vimu6g03024 709 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Vimu6g03024 709 Gene3D Transferase(Phosphotransferase) domain 1 143 214 - -
Vimu6g03024 709 ProSiteProfiles Protein kinase domain profile. 101 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03024 709 ProSiteProfiles EF-hand calcium-binding domain profile. 603 638 IPR002048 GO:0005509
Vimu6g03024 709 Pfam Protein kinase domain 103 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03024 709 Pfam Protein kinase domain 350 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03024 709 Gene3D - 496 671 - -
Vimu6g03024 709 PANTHER SERINE/THREONINE-PROTEIN KINASE 350 664 - -
Vimu6g03024 709 Pfam EF-hand domain pair 549 597 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03024 Vimu-Chr6 26720041 26723960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03024 350 704 EF-hand Containing Proteins AT5G19450 79.670 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu6g03024 Pkinase 2.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03024 K13412 - gmx:100790745 685.256