Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03020 ATGGCCGAATCATTTCTGTTCAGCATAGCAGAGTCACTCATAGCAAAGCTTGCTTCTCATGCTTTTCAAGAAGCTTCTCGAGTGGTGGGTTTATACGATCATCTTCGAGACCTTACAAAGACTCTCTCTTTCATCAAGGCTGTTCTGTTAGATGCTCAGCAAAAGCAAGATCACAACCATCAACTCCACGAATGGCTCACTCACCTTAAAACTGTCTTCTCCGAAGCACAAGATGTTTTGGATGAATTCGAGTGTCAAACACTGCGAAACAAAGTAGTCAAAGTTTATGATAGCACCAAAGACAAGGTAAGTCACTTCCTCTCAACCTCTAATCCAATTGTTTTTCGTTTCAAGATGGCACGAAAAATTAAAGATATCAACAACAGACTAAACAAGGTTGCAGCCGATAGGCATAAGTTTAGTCTTCAAATAATTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCCCGTGTGAGTGATTCAGATGTGATAGGAAGGAAACACGATAAAGAAAAGATAATAGAACTTTTGATGCAGCAGAATCCTAATGATAATGATACAAGTCTATCAGTTATCCCAATTGTGGGGATTGGAGGCTCGGGAAAGACTACACTTGCAAAGTTTGTGTTCAATGACAACAGGATCCGGGAGTGCTTCCCATTGAAGATGTGGGTGTGTGTTTCTGTTGACTTTGACATTAAGCAACTTATTATCAAAATCATCAATTCTGCCAATGGTGTAGATGTTCCTCCTCACCAACAGAATTTGAACATGTTGGATCCGGAGCAACTGCAAAACCGATTGAAAAGCAAACTTTCCGGTCAAAAGTTTCTTCTTGTTTTGGATGACGTATGGAACGAAAGGCGTCTTAAATGGGTTGAGTTGAGGAATTTAATCCAAGTAAGTGGAGCAGGAAGTAAAGTTGTAGTGACCACACGCAATCATTCGATTGCTTCCATGATGGGTACAGTTCCCTCTCACAATTTAGAAGGTCTTTCGGAAGAGGAGTCATTGTCTCTGTTTGTGAAGTGGGCATTTAAAGAAGGAGAGGAGGAAAAACATCCTCACTTAGTAAATATTGGCAGAGAAATTGTGAAAAAATGCAGAGGGGTTCCATTGGCAGTGAGAACATTAGGTAGTTTACTATTCTCGAAATTTGAGGACAGTGAATGGAAATATGTGAGTGATAGTGAAATCTGGAATTTGCCTCAGGAAAAAGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCTTGCCATCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAGGATCATTTATTCAATAGTTATAAAATGACTGCGCTTTGGGGGGCACATGGGCTCATTACACTACCAAAAACGAATAGAACACTTGAAGATGTGGCCAATCAATATTTGCATGAACTCCTGTCAAGATCCTTTGTCCAAGATTTTGATAACTTTGGCACTTCTTACAATTTTAAAATACATGATTTGGTGCATGATCTCGCCCTATTTGTTGCGAAGGATGAGTGTCTACACGTGCGTTCCAACATTCAAAATATTCCAGAAAATGTTGGGCATCTGTCTTTTGCTGAAAGCAGTTTGTTTGACAATTTAGTCATAAAAAAATCAGCAGCTGTGAGAACCGTACTGTTTCCAAATGGTGTAGGTGCCAACGGTGAAACTATACTAAATACGTGCCTGTCAAAGTTCAAATGCTTGCGAGTTTTGAATTTAAGTGGTTTGACATTGGAGACTTTGCCCCGCACCATTGCTAAGATGAAACATTTGAGATATTTGGACATTAGCAATAATCTCAAGATTAAGAGACTCCCCGATTCTATTTGCAAGCTCCAAAGTTTGCAAGTGTTGTTAATTAACGGATGCATGGAGCTGGAAGTATTGCCCAAAGGATTAAGAAAATTAATCAGTCTCCGTTATTTGTTTTTTAGCACAAAGCAAACTGTTTTGCCTGTGAATGAGATCGCCCAATTGGGGTCACTTGAATACTTGAGTATTGAATCGTGCCATAATGTGGAGTCCATCTTTGGAGGGGTGAAATTCCCTTCTCTTAAAACATTGTACGTTCGAAACTGTCAGAGTCTAAAGTCAATGTCGCTGGAATGTCAAAATTTTCCTGAATTAGAAACATTGGCTGTTAGGACCTGCGACAATTTAGACTTGAAACTGTGGAAGGGCGTTCATAAAAAAGAAAGCCCGAAGCTGAAGTTAAAACTTGTATTTTTGGACGGTTTACCACAGCTGGTGGACTTGCCTGAATGGGTTGAGGAAGCTGCCAACTCCTTAGGGGGCTTGATTGTTTCAAATTGTGACAATATTAAAACACTTCCATATTGGTTACCAACTCTCACTAATCTGAAATCACTTCATTTATTAGGTTGCCTAAAATTGGTATCTAGCCCAGGTAACATTCATCACCTCACTACACTTGAAAGTTTGAGAATTAGAGGTTGTCCTAACTTACATAAAAAATATGGACCCAATGTTGGATGGTTGTGGCCCACAATATCACACATCAAAGACATTGTGATTCATGAACCATGA 2577 0.395 MAESFLFSIAESLIAKLASHAFQEASRVVGLYDHLRDLTKTLSFIKAVLLDAQQKQDHNHQLHEWLTHLKTVFSEAQDVLDEFECQTLRNKVVKVYDSTKDKVSHFLSTSNPIVFRFKMARKIKDINNRLNKVAADRHKFSLQIIDVDTRVVHRRDMTHSRVSDSDVIGRKHDKEKIIELLMQQNPNDNDTSLSVIPIVGIGGSGKTTLAKFVFNDNRIRECFPLKMWVCVSVDFDIKQLIIKIINSANGVDVPPHQQNLNMLDPEQLQNRLKSKLSGQKFLLVLDDVWNERRLKWVELRNLIQVSGAGSKVVVTTRNHSIASMMGTVPSHNLEGLSEEESLSLFVKWAFKEGEEEKHPHLVNIGREIVKKCRGVPLAVRTLGSLLFSKFEDSEWKYVSDSEIWNLPQEKDDILPALKLSYDLLPSYLRQCFALFSLYPKDHLFNSYKMTALWGAHGLITLPKTNRTLEDVANQYLHELLSRSFVQDFDNFGTSYNFKIHDLVHDLALFVAKDECLHVRSNIQNIPENVGHLSFAESSLFDNLVIKKSAAVRTVLFPNGVGANGETILNTCLSKFKCLRVLNLSGLTLETLPRTIAKMKHLRYLDISNNLKIKRLPDSICKLQSLQVLLINGCMELEVLPKGLRKLISLRYLFFSTKQTVLPVNEIAQLGSLEYLSIESCHNVESIFGGVKFPSLKTLYVRNCQSLKSMSLECQNFPELETLAVRTCDNLDLKLWKGVHKKESPKLKLKLVFLDGLPQLVDLPEWVEEAANSLGGLIVSNCDNIKTLPYWLPTLTNLKSLHLLGCLKLVSSPGNIHHLTTLESLRIRGCPNLHKKYGPNVGWLWPTISHIKDIVIHEP 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03020 858 PANTHER DISEASE RESISTANCE PROTEIN RP 35 826 IPR044974 GO:0006952
Vimu6g03020 858 SUPERFAMILY L domain-like 498 837 - -
Vimu6g03020 858 PRINTS Disease resistance protein signature 596 612 - -
Vimu6g03020 858 PRINTS Disease resistance protein signature 275 289 - -
Vimu6g03020 858 PRINTS Disease resistance protein signature 372 386 - -
Vimu6g03020 858 PRINTS Disease resistance protein signature 195 210 - -
Vimu6g03020 858 Gene3D Ribonuclease Inhibitor 544 848 IPR032675 -
Vimu6g03020 858 Gene3D - 149 328 IPR027417 -
Vimu6g03020 858 FunFam Probable disease resistance protein At1g61300 149 329 - -
Vimu6g03020 858 Pfam Rx N-terminal domain 11 98 IPR041118 -
Vimu6g03020 858 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 434 IPR027417 -
Vimu6g03020 858 Pfam NB-ARC domain 171 422 IPR002182 GO:0043531
Vimu6g03020 858 Gene3D - 420 508 IPR036388 -
Vimu6g03020 858 Gene3D - 335 419 IPR042197 -
Vimu6g03020 858 Gene3D - 10 124 - -
Vimu6g03020 858 Pfam Leucine rich repeat 578 633 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03020 Vimu-Chr6 26687881 26690457 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03020 578 675 WRKY Transcription Factor Family AT4G12020 31.633 1.52e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03020 - - gmx:100777049 1192.95