Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03018 ATGGCCGAATCATTTCTGTTCAGCATAGCAGAGTCACTCATAGCAAAGCTTGCTTCTCATGCTTTTCAAGAAGCTTCTCGAGTGGTGGGTTTATACGATCATCTTCGAGACCTTACAAAGACTCTCTCTTTAGTCAAGGCTGTTCTGTTAGATGCTCAGCAAAAGCAAGATCACAACCATCAACTCCGTGAATGGCTCACTCAACTTAAAACTGTCTTCTCCGAAGCAGAAGATGTTTTGGATGAATTTGAGTGTCAAACACTGCAAAACAAAGTGGTCAAAGCTCATGGTAGCACCAAAGCCAAGGTAAGTCACTTCGTCTCAACCTCTAATCCACTTGTTTTTCGTTTCAAGATGGCACAACAAATTAAAGATATCAACAACAGACTAAACAAGGTTGCAGCGAATAGGCATAAGTTTAGTCTTCAAATAATTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCCCGTGTGAGTGATTCAGATGTGATAGGAAGGAAACACGATAAAGAAAACATAATAGAACTTTTGATGCAGCAGAATCCTAATGATGATGATACAAGTCTATCAGTTATTCCAATTGTGGGGATTGGAGGTTTGGGAAAGACTACACTTGCAAAGTTTGTGTTCAATGACAACAGGGTCCAAGAGTGCTTCCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAGCAATTGATTATCAAAATCATCAATTCTGCCAATGATGAAGATGTTTCTCCTCACCAACAGAATTTGAACATGTTGGATCTGGAAGAACTGCAAAAGCAATTGAAAAGAAAACTTTCCGGTCAAAAGTTCTTACTCGTATTGGACGACGTATGGAACGAAGAGCGTGTTAAATGGGTTGAGTTGAGGAATTTAATCCAAGTAGGTGCAGCAGGAAGCAAAGTTGTAGTGACCACACGTAGTCCTTCGATTGCTTCCATGATGGGCACAGTTCCCTCTCACATTTTAGAAGGTCTTTCGGAAGAGGAGTCATTGTCTCTGTTTGTGAAGTGGGCATTTAAAGAAGGAGAGGAGGAAAAACATCCTCACTTAGTAAATATTGGCAGAGAAATTGTGAAAAAATGCAGAGGGGTTCCATTGGCAGTGAGAACATTAGGTAGTTTACTATTCTCGAAATTTGAGGACAGTGAATGGCAATATGTGAGTGACAGTGAAATCTGGAATTTGCCTCAGAAAAAAGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCTTGCCATCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAGGATCATTTATTCAACAGTTATAAAATGACTGCGCTTTGGGGGGCACATGGGCTTATTACACTACCAAAAACGAATAGAACACTTGAAGATGTGGCCAATCAATATTTGCATGAACTCCTGTCAAGATCCTTTCTCCAAGAAGTTAATAACTTTGCAACTTTTTACAATTTTAGAATACATGATTTGGTGCATGATCTAGCTGTTTTTGTTGCAAAGGATGAGTGTCTATATGTAAGTTCCAACATTCAAAATATTCCAGAAAATGTTGGGCATCTGTCTTTTGCTGAAAGCAGTTTGTTTGACAATTTAGTGATAAAAAAATCAGCATCTGTGAGAACCGTACTGTTTCCAAATGGTGGAGTAGGTGCCAACGGTGAAACTATACTAAATACGTGTCTGTCAAAGTTCAAATGCTTGCGAGTTTTGAATTTAAGTGGTATGGCATTCGAGACTTTGCCTCGTGCCATTGCTAAGATGAAACATTTGAGGTATTTGGACATTAGCAAAAATTTAAAGATTAAGAGACTCCCCGACTCTATTTGCAATCTCCAAAGTTTGCAAGTGTTGTTCTTTAACGGATGCATAGAGCTGGAAGTATTGCCCGAAGGATTAAGAAAATTAATCAGTATCCGTCATTTGGAGTTTAGCACAAAGCAAACTGTTTTGCCTGTGAATGAGATGGCCAAATTGGTGTCGCTTGAATGCTTGGTTATTGAATCATGCCATAATGTGGAGTCCGTCTTTGGAGGGGTGAAATTCCCTTCTCTTAAAACATTGTACGTTCGAAACTGTCAGAGTCTAAAGTCAATGTCGCTGGATGGTCAAAATTTTCCTGAATTAGAAACATTGGTTGTTGCGAACTGCGGTAATTTGGAGTTGGAACTGTGGAAGGGCGATCATGAAGAAGAAAGCCCCAAGCTGAAGTTAAAACTTGTATTGTTTATCCGTTTACCACAACTGGTGGCATTGCCTAAATGGGTTGAGGAAGCTGCCAACTCCTTAGGGTGCTTGATTGTTGCAAATTGTGAGAATATTGAAACACTTCCAAATTGGTTACCAACTCTGACTAATCTGAAATCACTTTATCTAATAGGTTGCCCAAATTTGGTATCTCTCTCAGATAACATTCATCACCTCACTGCACTTGAAAGTTTGAAGATTGGAGATTGTGCTAACTTATATCAAAAATATGAACCAAATGTTGGAGAGTTTTGGCCCAAAATATCACACATCAAAAACATTGTGATTTATGAACTTAAGAAGAATTAA 2589 0.3893 MAESFLFSIAESLIAKLASHAFQEASRVVGLYDHLRDLTKTLSLVKAVLLDAQQKQDHNHQLREWLTQLKTVFSEAEDVLDEFECQTLQNKVVKAHGSTKAKVSHFVSTSNPLVFRFKMAQQIKDINNRLNKVAANRHKFSLQIIDVDTRVVHRRDMTHSRVSDSDVIGRKHDKENIIELLMQQNPNDDDTSLSVIPIVGIGGLGKTTLAKFVFNDNRVQECFPLKMWVCVSDDFDIKQLIIKIINSANDEDVSPHQQNLNMLDLEELQKQLKRKLSGQKFLLVLDDVWNEERVKWVELRNLIQVGAAGSKVVVTTRSPSIASMMGTVPSHILEGLSEEESLSLFVKWAFKEGEEEKHPHLVNIGREIVKKCRGVPLAVRTLGSLLFSKFEDSEWQYVSDSEIWNLPQKKDDILPALKLSYDLLPSYLRQCFALFSLYPKDHLFNSYKMTALWGAHGLITLPKTNRTLEDVANQYLHELLSRSFLQEVNNFATFYNFRIHDLVHDLAVFVAKDECLYVSSNIQNIPENVGHLSFAESSLFDNLVIKKSASVRTVLFPNGGVGANGETILNTCLSKFKCLRVLNLSGMAFETLPRAIAKMKHLRYLDISKNLKIKRLPDSICNLQSLQVLFFNGCIELEVLPEGLRKLISIRHLEFSTKQTVLPVNEMAKLVSLECLVIESCHNVESVFGGVKFPSLKTLYVRNCQSLKSMSLDGQNFPELETLVVANCGNLELELWKGDHEEESPKLKLKLVLFIRLPQLVALPKWVEEAANSLGCLIVANCENIETLPNWLPTLTNLKSLYLIGCPNLVSLSDNIHHLTALESLKIGDCANLYQKYEPNVGEFWPKISHIKNIVIYELKKN 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03018 862 Gene3D Ribonuclease Inhibitor 564 742 IPR032675 -
Vimu6g03018 862 Gene3D Ribonuclease Inhibitor 745 844 IPR032675 -
Vimu6g03018 862 Gene3D - 10 124 - -
Vimu6g03018 862 PANTHER DISEASE RESISTANCE PROTEIN RP 35 827 IPR044974 GO:0006952
Vimu6g03018 862 Gene3D - 335 419 IPR042197 -
Vimu6g03018 862 Gene3D - 420 508 IPR036388 -
Vimu6g03018 862 Gene3D - 148 330 IPR027417 -
Vimu6g03018 862 FunFam Probable disease resistance protein At1g61300 149 329 - -
Vimu6g03018 862 Pfam Rx N-terminal domain 11 98 IPR041118 -
Vimu6g03018 862 Coils Coil 66 86 - -
Vimu6g03018 862 PRINTS Disease resistance protein signature 691 707 - -
Vimu6g03018 862 PRINTS Disease resistance protein signature 195 210 - -
Vimu6g03018 862 PRINTS Disease resistance protein signature 275 289 - -
Vimu6g03018 862 PRINTS Disease resistance protein signature 372 386 - -
Vimu6g03018 862 SUPERFAMILY L domain-like 498 834 - -
Vimu6g03018 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 434 IPR027417 -
Vimu6g03018 862 Pfam NB-ARC domain 171 422 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03018 Vimu-Chr6 26679303 26681891 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03018 178 812 WRKY Transcription Factor Family AT5G45050 20.690 6.37e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03018 - - pvu:PHAVU_001G133600g 1225.69