LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu6g03016	ATGGCGAGAGGGAAAGAGGGGGAAAATCAGGAGAGAGAAAGGAGAGAAGACGAAGAGGTGCGAGAGACTACAGAAGGCGAAAACGGTGGTGAAGCAACGGTGGAGGTGATGGAGGAGGTCACAGCCAATGAGAAAGAAGGAGGAACAATGAGAGAGACGCGAAAAATGACGAGAGAGAGAGCACCGAGAAATGGCCAGAGAGAAGACGAAGGGATAACTGGAAATTCATTTTGGAGAAACCGCAAAACAATTTTTTCTTTCGAAATTATCCTCCACATCTGGAATCCATTCATTAAAGAAGTTGACTTAGTGGGTTTTCCCTACCCATCATATCTCTGCCGTTTCATAGCGGAGTCACTCGTAGCAAAACTTGCTTCTCATGCTTTTCAAGAAGCTTTTCGAGTAGTTGGTTTATATGACGATCTTCAAGACCTTACAAACACTCTCTCTTTAGTTAAGGCTGTGCTGTTAGATGCTCAGCAAAAGCAAGATCACAACCATCAACTCCGCGAATGGCTCACTCACCTTAAAACTGTCTTCTCCGAAGCCGAAGATGTTTTGGATGAATTTGAGTGTCAAACACTGCGAAACAAAGTGGTCAAGGCTCATAGTAGCACCAAAGATAAGGTAAGTCACTTCTTTTCCACCTCTAATCCACTTCTTTTTCGCTTCAAGATGGCACAACAAATTAAAAATATCAACAACCGACTAAACAAGGTTGCAGCGGATAGGCATAAGTTTAATCTTCAAATAATTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCCCGTGTGAGTAATTCAGACGTGATAGGTAGGAAAAATGACAAAGAAAAGATCATAGAGCTTTTGATGCAGCAGAATCCTAATGATGATGATACAACTCCATCTGTTATCCCTATTGTGGGGATTGGAGGCTTGGGAAAGACTACACTTGCAAAGTTTGCGTTCAATGACAACAGGATCCAGGAGTGCTTCCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAGCAATTGATTATCAAAATCATCAATTCTGCCAACGATGAAGATGTTCCTCCTCACCAACAGAATTTGAACATGTTGGATCTGGAGCAACTGCAAAAGCAATTGAAAAGAAAACTTTCCGGTCAAAAGTTCTTACTCGTATTGGACGACGTATGGAACGAAGACCGTGTTAAATGGGTTGAGTTGAGGAATTTAATCCAAGTAAGTGGAGCAGGAAGTAAAGTTGTACTGACCACACGTAGTCATTCCATTGCTTCCATGATGGGCACAGTTCCCTCTCACATTTTAGAAGGTCTTTCTGAGCAGGATTCTTTGTCTCTGCTTGTCAAGTGGGCATTTAAAGAAGGAGAGGAGGAAAAACATCCTCACTTAGTAAATATTGGCAGAGAAATTGTGAAAAAATGCAGAGGGGTTCCACTGGCAGTGAGAACAGTAGGTAGTTTACTATTCTCGAGATTTGAGGACAGTGAATGGGAATATGTGAGTCGCAATGAAATCTGGAATTTGCCTCAGAAAAAAGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCTTGCCATCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAGGATTATGAATTCTTTAGTAATGATATAGCTTCAATTTGGGGGTCACTTGGACTCATTACACTACCAAAAACGAATAGGACACTTGAAGATGTGGCCAATCAATATTTGCATGAACTCCTGTCAAGATCCTTTCTCCAAGATTTTCAAAACTTTGGCAGTTCTTACTCTTTTAGAATACATGATTTGGTGCATGATCTCGCCCTATTTGTTGCGGCGGATGAGTGTCTGCACGTGAGTTTGAACATTCAAAATATTCCATATAATGTTCGACATCTGTATTTTGCTGAAAGCAGTTTGCTCGAAAATTTAGTCACCAAAAAATCAGCAGTTGTGAGATCCGTACTGTTTTCAAATGATGCAGCAGCTGCCATCGATGAAGCTTTACTAAATACGTGTCTGTCAAAGTTCAAATGCTTGCGAGTTTTGGTCTTAAGTGGTTCGACATTCGAGACTTTGCCTTGTACCATTGCTAAGATGAAACATTTGAGATATTTGGTCATTAACAATAATCTCAAGATTAAGAGACTCCCCGACTCTATTTGCAAGCTCCAAAGTTTGCAAGTGTTGTCAATTAAAGGATGCATGGAGCTGGAAGTATTGCCTAAAGGATTAAGAAAACTAGTGAGTATCCGTTGTTTGGAGTTTAGCACAAGGCAAACTGTTTTGCCTGTGAATGAGATCGCCCAATTGGGGTCGCTTGAATTCTTGTACATTGATTCATGCCATAATGTAGAGTCCATCTTTGGAGGGGTGAAATTCCCTTCTCTTAAAATATTATGCATTGTGAGCTGTCAGAGTCTAAAGTCAATATCGTTGGATGGTCAAAATTTTCCTGAATTAGAAACATTGGTTCTTGCTGCCTGCCCTAATTTGGAGTTGGAACTGTGGAAGGGCGATCATGAAAAAGAAAGCCCCAAGCTGAAGTTAAAATTGATTGGATTTAACTGTTTATCACAGCTGGTGGCCCTGCCTAGAGGGCTTCAGGAAGCTGCCAAATCGTTACAGTGCTTGTTTGTTTCAAATTGTGAAAATATTGAAACACTTCCAGATTGGTTAACAACTCTGACTGATCTGAAAACACTTAGTTTAATCGATTGTCCAAAGTTGGCATCTCTCCCAGATAATATGCATCACCTCTCTGCGCTTGAAAATTTGAGGATTGAAGATTGTGTTAACTTACGTAAAAAGTATCAACCCCATGTTGGAGAATTTTGGTCCAAAATATCACATATCAAAAACATTATCATTGTTGAACCAGAAGAGCCTGAGAATTAG	2916	0.4036	MARGKEGENQERERREDEEVRETTEGENGGEATVEVMEEVTANEKEGGTMRETRKMTRERAPRNGQREDEGITGNSFWRNRKTIFSFEIILHIWNPFIKEVDLVGFPYPSYLCRFIAESLVAKLASHAFQEAFRVVGLYDDLQDLTNTLSLVKAVLLDAQQKQDHNHQLREWLTHLKTVFSEAEDVLDEFECQTLRNKVVKAHSSTKDKVSHFFSTSNPLLFRFKMAQQIKNINNRLNKVAADRHKFNLQIIDVDTRVVHRRDMTHSRVSNSDVIGRKNDKEKIIELLMQQNPNDDDTTPSVIPIVGIGGLGKTTLAKFAFNDNRIQECFPLKMWVCVSDDFDIKQLIIKIINSANDEDVPPHQQNLNMLDLEQLQKQLKRKLSGQKFLLVLDDVWNEDRVKWVELRNLIQVSGAGSKVVLTTRSHSIASMMGTVPSHILEGLSEQDSLSLLVKWAFKEGEEEKHPHLVNIGREIVKKCRGVPLAVRTVGSLLFSRFEDSEWEYVSRNEIWNLPQKKDDILPALKLSYDLLPSYLRQCFALFSLYPKDYEFFSNDIASIWGSLGLITLPKTNRTLEDVANQYLHELLSRSFLQDFQNFGSSYSFRIHDLVHDLALFVAADECLHVSLNIQNIPYNVRHLYFAESSLLENLVTKKSAVVRSVLFSNDAAAAIDEALLNTCLSKFKCLRVLVLSGSTFETLPCTIAKMKHLRYLVINNNLKIKRLPDSICKLQSLQVLSIKGCMELEVLPKGLRKLVSIRCLEFSTRQTVLPVNEIAQLGSLEFLYIDSCHNVESIFGGVKFPSLKILCIVSCQSLKSISLDGQNFPELETLVLAACPNLELELWKGDHEKESPKLKLKLIGFNCLSQLVALPRGLQEAAKSLQCLFVSNCENIETLPDWLTTLTDLKTLSLIDCPKLASLPDNMHHLSALENLRIEDCVNLRKKYQPHVGEFWSKISHIKNIIIVEPEEPEN	971

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu6g03016	971	Gene3D	-	117	231	-	-
	Vimu6g03016	971	MobiDBLite	consensus disorder prediction	38	67	-	-
	Vimu6g03016	971	Gene3D	-	527	615	IPR036388	-
	Vimu6g03016	971	PANTHER	DISEASE RESISTANCE PROTEIN RP	143	938	IPR044974	GO:0006952
	Vimu6g03016	971	FunFam	Probable disease resistance protein At1g61300	256	436	-	-
	Vimu6g03016	971	Gene3D	-	256	437	IPR027417	-
	Vimu6g03016	971	MobiDBLite	consensus disorder prediction	1	73	-	-
	Vimu6g03016	971	PRINTS	Disease resistance protein signature	728	744	-	-
	Vimu6g03016	971	PRINTS	Disease resistance protein signature	382	396	-	-
	Vimu6g03016	971	PRINTS	Disease resistance protein signature	479	493	-	-
	Vimu6g03016	971	PRINTS	Disease resistance protein signature	302	317	-	-
	Vimu6g03016	971	Gene3D	Ribonuclease Inhibitor	849	959	IPR032675	-
	Vimu6g03016	971	Gene3D	Ribonuclease Inhibitor	623	847	IPR032675	-
	Vimu6g03016	971	SUPERFAMILY	L domain-like	605	942	-	-
	Vimu6g03016	971	Pfam	NB-ARC domain	278	529	IPR002182	GO:0043531
	Vimu6g03016	971	Pfam	Rx N-terminal domain	118	205	IPR041118	-
	Vimu6g03016	971	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	258	541	IPR027417	-
	Vimu6g03016	971	MobiDBLite	consensus disorder prediction	1	28	-	-
	Vimu6g03016	971	Gene3D	-	442	526	IPR042197	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu6g03016	Vimu-Chr6	26672592	26675660	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu6g03016	686	790	WRKY Transcription Factor Family	AT4G12020	31.132	6.93e-08	55.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu6g03016	-		-	pvu:PHAVU_001G133600g	1170.61