Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03015 ATGGCTGAATTATTTCTCTTCAGCATTGCAGAGTCACTCATAACAAAGCTTGCTTCTCATGCTTTTCAAAAAGCTTCTCGAGTGGTGGGTTTATACGACGATCTTCGAGACCTTGGAAACACTCTCTCTTTCATCAAGGCTGTTCTTTTAGATGCTCAGCAAAAGCAAGATCACAACCATCAACTCCGCGAATGGCTCACTCACCTTAAAACTGTCTTCTCCGAAGCCGAAGATCTTTTGGATGAATTTGAGTATCAAACACTGCAAAACAAAGTGGTCAAAGCTCATGGTAACACCAAAGACAAGGTAAGTCGCTTCTTCTCCACTTCTAATCCACTTCTTTTTCGCTACAAGATGACACAACAAATTAAATATATCAACAACAGACTAGACAAGGTTGCAGCGCATAGGCATAAGTTTAGTCTTCAAATAATTGATGTTGACACACGTGTTGTTCATCGGAGAGATATGACACACTCCCGTGTCAGTGATTCAGATGTGATAGGAAGAAAAAACGACAAAGAAAAGATCATAGAGCATTTGATGCAGCAGAATCCTAATGATGATGATACAAGTCTATCTGTTATCCCCATTGTAGGGATTGGAGGCTTGGGAAAGACTACACTTGCAAAGTTTGTGTTCAATGACAACAGGATCCAGGAATGCTTCCCATTGAAGATGTGGGTGTGTGTTTCTGATGACTTTGACATTAAGCAATTGATTATCAAAATCATCAATTCTGCCAATGATGAAGATGTTTCTCCTCACCAACAGAATTTGAACATGTTGGATCTGGAAGAACTGCAAAAGCAATTGAAAAGAAAACTTTCCGGTCAAAAGTTCTTACTCGTATTGGACGACGTATGGAACGAAGACCGTGTTAAATGGGTTGAGTTGAGGAATTTAATACAAGTAAGTGGAGCAGGAAGTAAAGTTGTACTGACCACACGTAGTCATTCAATTGCTTCCATGATGGGCACAGTTCCCTCTCACATTTTAGAAGGTCTTTCTGAGCAGGATTCTTTGTCTCTGCTTGTCAAGTGGGCATTTAAAGAAGGAGAGGAGGAAAAACATCCTCACTTAGTAAATATTGGCAGAGAAATTGTGAAAAAATGCAGAGGGGTTCCATTGGCAGTGAGAACATTAGGTAGTTTACTATTCTCGAAATTTGAGGACAGTGAATGGCAATATGTGAGTGACAGTGAAATCTGGAATTTGCCTCAGAAAAAAGATGACATTTTACCTGCCCTTAAACTGAGTTATGATCTCTTGCCATCCTATTTGAGGCAATGTTTTGCATTGTTTTCCCTTTACCCAAAGGATTATTTATTCCCTAGTTATGAAATAGCTGCGATTTGGGGGTCACTTGGACTCATTGCACTGCCAAAAACAAATAGGACACTTGAAGATGTGGCCAATCAATATTTGCATGAACTCCTGTCAAGATCCTTTCTCCAAGATTTTGAAAACTTTGGCAATAAGTTTAGGTTTAGAATACATGATTTGGTGCATGATCTGGCCTTATTTGTTGCGACAGATGAGTGTCTACATGTGAGTTTCAAAATTCAAAATATTCCAGATAATGTTCGACATCTGTCTTTTGCTGAAAGCAGTTTGTTCGGAAATTTAGTCACAAAAAAATCAACAGTTGTGAGATCCGTACTATTTCCAAATGGTGCAGCAGCTGCCATCGATGAAGCTTTACTAAATATGTTCCTGTCAAAGTTCAAATACTTGCGAGTTTTGGATTTACGTGGTTCGACATGCAAGACTTTGCCCCGTGCCATTGCTAAGATGAAACATTTGAGATATTTGGACATTAGCGAAAATCCCAACATTAAGAGACTCCCGGACTCTATTTGTAAGCTCCAAAGTTTGCAAGTGTTGTCACTTAAGACATGCAAGAAGCTGGAAATATTGCCCAAAGGATTTAGAAAACTAATCAGTCTCCGTTCTTTGGAGTTTAGCACAAAGCAAACTATTTTGCCTGTGAATGAGATCGCCCAATTGGGGTCGCTTGAATACTTGTACATTGAATCGTGCCATAATGTGGAGTCCATCTTTGGAGATGTGAAATTCCCTTCTCTTAAAACATTATGCGTTGGGGATTGTCAGGGACTAAAGTCATTGTCTCTGGATGGTCAAAATTTTCCTGAATTAGAAACATTGCTTGTTAAGGACTGCGGTAATTTGGACTTGGAGCTGTGTAAGGGCCACCATGAAGAAGAAAGCCCCAAGCTGAAGCTAAAACTTGTATTATTTTTCGGTTTATCACAGATGGTGGCCCTGCCTAACTGGCTTCAGGAAGCTGTCAAATCCTTGCAGCGCTTGTATGTTTTAAATTGTGATAATATTGAAACACTTCCGGATTGGTTAACAACTCTGACTGATCTCAAAGCACTTGGTTTAATAAATTGTCCAAATCTGGTATCTCTGGCAGATAACATTCATCACCATACTGCACTTGAAAGTTTGAGGATTGAAGGTTGTGCTAACTTATATAAAAAATATGAACCCAATGTTGGAGAGTTTTGGCCCAAAATATCACACATAAAAAAGATTGTGATCGTAGAACCAGAAGAACTTAAGAAGAATTAG 2598 0.3918 MAELFLFSIAESLITKLASHAFQKASRVVGLYDDLRDLGNTLSFIKAVLLDAQQKQDHNHQLREWLTHLKTVFSEAEDLLDEFEYQTLQNKVVKAHGNTKDKVSRFFSTSNPLLFRYKMTQQIKYINNRLDKVAAHRHKFSLQIIDVDTRVVHRRDMTHSRVSDSDVIGRKNDKEKIIEHLMQQNPNDDDTSLSVIPIVGIGGLGKTTLAKFVFNDNRIQECFPLKMWVCVSDDFDIKQLIIKIINSANDEDVSPHQQNLNMLDLEELQKQLKRKLSGQKFLLVLDDVWNEDRVKWVELRNLIQVSGAGSKVVLTTRSHSIASMMGTVPSHILEGLSEQDSLSLLVKWAFKEGEEEKHPHLVNIGREIVKKCRGVPLAVRTLGSLLFSKFEDSEWQYVSDSEIWNLPQKKDDILPALKLSYDLLPSYLRQCFALFSLYPKDYLFPSYEIAAIWGSLGLIALPKTNRTLEDVANQYLHELLSRSFLQDFENFGNKFRFRIHDLVHDLALFVATDECLHVSFKIQNIPDNVRHLSFAESSLFGNLVTKKSTVVRSVLFPNGAAAAIDEALLNMFLSKFKYLRVLDLRGSTCKTLPRAIAKMKHLRYLDISENPNIKRLPDSICKLQSLQVLSLKTCKKLEILPKGFRKLISLRSLEFSTKQTILPVNEIAQLGSLEYLYIESCHNVESIFGDVKFPSLKTLCVGDCQGLKSLSLDGQNFPELETLLVKDCGNLDLELCKGHHEEESPKLKLKLVLFFGLSQMVALPNWLQEAVKSLQRLYVLNCDNIETLPDWLTTLTDLKALGLINCPNLVSLADNIHHHTALESLRIEGCANLYKKYEPNVGEFWPKISHIKKIVIVEPEELKKN 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03015 865 Gene3D - 10 124 - -
Vimu6g03015 865 Pfam Leucine rich repeat 578 632 IPR001611 GO:0005515
Vimu6g03015 865 Gene3D - 149 330 IPR027417 -
Vimu6g03015 865 Pfam NB-ARC domain 171 422 IPR002182 GO:0043531
Vimu6g03015 865 PRINTS Disease resistance protein signature 372 386 - -
Vimu6g03015 865 PRINTS Disease resistance protein signature 195 210 - -
Vimu6g03015 865 PRINTS Disease resistance protein signature 275 289 - -
Vimu6g03015 865 PRINTS Disease resistance protein signature 621 637 - -
Vimu6g03015 865 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 434 IPR027417 -
Vimu6g03015 865 SUPERFAMILY L domain-like 498 833 - -
Vimu6g03015 865 Gene3D - 420 508 IPR036388 -
Vimu6g03015 865 Gene3D - 335 419 IPR042197 -
Vimu6g03015 865 FunFam Probable disease resistance protein At1g61300 149 329 - -
Vimu6g03015 865 Gene3D Ribonuclease Inhibitor 519 746 IPR032675 -
Vimu6g03015 865 Gene3D Ribonuclease Inhibitor 747 851 IPR032675 -
Vimu6g03015 865 PANTHER DISEASE RESISTANCE PROTEIN RP 49 829 IPR044974 GO:0006952
Vimu6g03015 865 Pfam Rx N-terminal domain 11 98 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03015 Vimu-Chr6 26668875 26671472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03015 178 812 WRKY Transcription Factor Family AT5G45050 20.746 4.19e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03015 - - pvu:PHAVU_001G133600g 1216.06