Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03008 ATGGATACTTGCAAGAAGTCACCCCTGAAGCCATGGAAGAAAGGGCCAACTAGGGGGAAAGGTGGTCCACAAAATGCTTCGTGCGAGTACCGAGGTGTTAGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGACTCTGGCTTGGTTCTTTTTCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAGGCTGCAAGGAGACTCTATGGACCAGATGCATACCTTAATCTTCCCCACCTGCAGCCCAGGTCCACTTCACTTACACCAGGAAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCGATGTTCCCTTCCTGTGGATTACTCAATGTAAGTGCTCAACCCAGTGTTCATTTTATCCATCAGAGGCTACAAGAGCTAAAGCAAAATTCAGTTGAGAGGCAATCCCCAAATAGTTCATCCGATGATCCGGTGGCAGAAATTCAGAATGTAGTAGACAACACTAATCATGCAGAAAGTCCTCCAAAAGACTCTCAAACATCATCAGAGGAGGTTCCAGGAGATATTCAAGAGAAACCCCAGATAGACCTACATGAGTTTCTTCAACAGCTGGGAATACTTAAAGATGAAAAACAGTCAGCTGATAGCACAGAAAGTTCAACAGTTCCTGAAGCTGTGTTGAGATATGAAAATGATGAATTGGGAGTGTTTTCTGACACGAGTGTTAACTGGGAGGCTTTGATTGAGATGCATGGAATTGCTGGTATTCAGGAATTAGAATCCACCCAGCTTGAAGCATATGGCACACATGATGACCTTACTTTCTCAACTTCCATCTGGAACTTCTAA 837 0.4444 MDTCKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFSTAEEAAMAYDEAARRLYGPDAYLNLPHLQPRSTSLTPGKFKWFPSKNFISMFPSCGLLNVSAQPSVHFIHQRLQELKQNSVERQSPNSSSDDPVAEIQNVVDNTNHAESPPKDSQTSSEEVPGDIQEKPQIDLHEFLQQLGILKDEKQSADSTESSTVPEAVLRYENDELGVFSDTSVNWEALIEMHGIAGIQELESTQLEAYGTHDDLTFSTSIWNF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03008 278 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Vimu6g03008 278 MobiDBLite consensus disorder prediction 164 183 - -
Vimu6g03008 278 MobiDBLite consensus disorder prediction 164 185 - -
Vimu6g03008 278 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Vimu6g03008 278 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Vimu6g03008 278 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Vimu6g03008 278 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Vimu6g03008 278 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Vimu6g03008 278 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Vimu6g03008 278 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Vimu6g03008 278 MobiDBLite consensus disorder prediction 1 28 - -
Vimu6g03008 278 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 235 - -
Vimu6g03008 278 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03008 Vimu-Chr6 26587058 26588669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03008 5 278 AP2-EREBP Transcription Factor Family AT3G57600 53.546 5.05e-87 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu6g03008 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03008 - - var:108328773 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03008 6 26587058 26588669 Vimu6g03008 6 26587058 26588669 ECH
Vimu6g03008 6 26587058 26588669 Vimu3g00379 3 3621922 3622773 PCT