Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03007 ATGCTGCTAACCGCATTACAAGTGAGAGTGAGAGTGAACATGGCAACTGGTGGAAGTAAGAAGCCTTTATCATTGCAGCAATTCATCTCTGTTACCGCTCCTCTTCTTGATTTGGAAAAGGAAGCTGAGATTTCAAGCTCAATTGCTACCGGCGCGTCCAGGAATTTGGACACCGCTCAAAAGAGGGGTTCCACAATCCTTAACTTGAAGTGCATCGATGTCCAGACAGGGCTTATGGGGAAGTCTCTGATCGAGTTCCAGTCTACAAAAGGAGATGTTCTTCCTGCACATAAGTTTGGTACTCATGATGTTGTTGTTTTAAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGACAAGGTGTTGTTTACAGATTAAAGGACTCGTCAATAACTGTTGCTTTTGATGATATACCGGAAGACGGTTTGAACAGTCCCCTAAGGCTGGAAAAAGTAGCAAATGAGGTGACATATCGCAGGATGAAAGACGCATTGATACAGTTGAGTAAAGGAGTGCACAGGGGTCCTGCCTCTGATCTGATTCCTGTCTTGTTTGGGGAGAGGCAACCTGCAGTGTCCAAGAAGGATATATCCTTTACTCCCTATAATAGAAATCTTGATCAGTCTCAGAAAGAAGCAGTTTTGAAAGCTCTGTCGTCAAAGAATGTGTTCTTGTTGCATGGACCACCTGGAACGGGAAAAACTACAACAGTTGTAGAAATTATATTACAAGAAGTAAAACGTGGATCTAAGATTCTTGCTTGTGCAGCCTCAAATATTGCTGTTGACAACATTGTAGAGCGGCTCGTTCCACATAGGTATGCTTATCTTATTATCTGTTTGGCCCTGAAATATTTAACTGCCTTAAGTGGTTTTACTTGGACTGGTGTGATAGTTAAGCTGGTGAGACTGGGTCATCCTGCACGCTTATTGCCTCAAGTACTGGAAAGTGCGCTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAACGGAAAACTTCTGAAAACCAAAGACAGAAATACAAGAAAGGACATACAGAGGGAACTTAGGACTCTATCCAAAGAAGAACGTAAAAGGCAGCAGCTTGCTGTAACAGATGTACTTAAAAGTGCAGATGTAATATTAACTACATTGATTGGGGCTTTCTCCAAGAAACTAGACAGCACTTCATTTGATTTGGTGATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCTCTGCTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTTCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACTCTCTTTGAACGACTTGCAGAAACGTATGGAGATGAAATCACATCAATGCTTACTGTGCAGTACCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACGACAGTAAGATCAAGGCTCATGCAAGTGTTAGTGCACATATGTTATATGATCTTGACGGTGTGAAGCGGACATCTTCAACTGAACCGACTCTTCTTCTTGTAGACACAGCTGGGTATGTGGATTATGTCCTTGTTGAAATTCTATCTTCTCATAACTGCTTGATTAGGAGGGACATGTGGAATGAAAATGTCATCGAACTGCTTATATTGATGAGATTCAGATGTGATATGGAAGAAAAAAAAGATGAAGAAGATAGCACCTTTAATGAAGGTGAAGCTGAAGTTACTGTGGCTCATGCGAAGAGACTAGTGCAAAGTGGGGTGCTTCCTTCTGATATAGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTGCTCAAGATGTTGAAAAACAAGGAGGACCGGTTGAAGGATGTTGAAATCTCAACAGTTGATGGTTTCCAAGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAAGAGGTCGGCTTTCTAAGTGATCGCCGGCGAATGAATGTAGCCGTGACACGGTCTAGAAGGCAATGCTGTCTTGTCTGTGACACAGAGACAGTCAGTGGTGATGGATTTCTAAAGCGATTGATTGAGTATTTTGAGGAGCATGGTGAATATCTGAGTGCATCTGAGTACCAGAATGAGTAG 2157 0.4205 MLLTALQVRVRVNMATGGSKKPLSLQQFISVTAPLLDLEKEAEISSSIATGASRNLDTAQKRGSTILNLKCIDVQTGLMGKSLIEFQSTKGDVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYRRMKDALIQLSKGVHRGPASDLIPVLFGERQPAVSKKDISFTPYNRNLDQSQKEAVLKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRYAYLIICLALKYLTALSGFTWTGVIVKLVRLGHPARLLPQVLESALDAQVLRGDNSGLANDIRKEMKALNGKLLKTKDRNTRKDIQRELRTLSKEERKRQQLAVTDVLKSADVILTTLIGAFSKKLDSTSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAETYGDEITSMLTVQYRMHELIMDWSSKELYDSKIKAHASVSAHMLYDLDGVKRTSSTEPTLLLVDTAGYVDYVLVEILSSHNCLIRRDMWNENVIELLILMRFRCDMEEKKDEEDSTFNEGEAEVTVAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEDRLKDVEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRSRRQCCLVCDTETVSGDGFLKRLIEYFEEHGEYLSASEYQNE 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03007 718 CDD SF1_C_Upf1 480 704 IPR047187 -
Vimu6g03007 718 SMART ultradead3 203 479 IPR014001 -
Vimu6g03007 718 Gene3D - 478 718 IPR027417 -
Vimu6g03007 718 Pfam AAA domain 455 687 IPR041679 -
Vimu6g03007 718 CDD DEXXQc_SMUBP2 206 479 - -
Vimu6g03007 718 Gene3D - 33 462 IPR027417 -
Vimu6g03007 718 FunFam DNA-binding protein SMUBP-2 51 153 - -
Vimu6g03007 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 704 IPR027417 -
Vimu6g03007 718 SMART AAA_5 221 576 IPR003593 GO:0016887
Vimu6g03007 718 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 45 717 - -
Vimu6g03007 718 Pfam AAA domain 207 446 IPR041677 GO:0004386
Vimu6g03007 718 Gene3D - 51 153 - -
Vimu6g03007 718 FunFam P-loop containing nucleoside triphosphate hydrolase 539 718 - -
Vimu6g03007 718 Coils Coil 333 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03007 Vimu-Chr6 26578160 26585022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03007 180 280 Core DNA Replication Machinery Family AT1G08840 35.644 1.49e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03007 - K19036 gsj:114406735 1160.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03007 6 26578160 26585022 Vimu6g03007 6 26578160 26585022 ECH