Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03002 ATGGCTGACCCTTACTCAAATTTTTTCTCATCCTCTTCCTTCTTCCGTTTCAATCACCATTTCCCATCTTCAAACCCTTCTCCTCACGCTCCCTATGTCCACCACAACTTCATCAACCACTCCAAAACAACCGACACCACTTTTTTCCACTACCACCACCACCACCACCACAACCATACTTCTTCCACAACTGCAACTTTTTCTTCCTTTCCACCTTCCCCTCCTTTGAGAGAAGAACTACCCCTCTTGAGACTCAGTCCGGCCAAGCAAGAGGAGGAAGATGAGGACCTGTCTTGCACTGGACCCATGGATGTGGAGGAGAGGATGCACATCCACCCCAAAGAGGAAGAAGATGATGAAGATGGCACTGTCACTGTTGCACTCCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCCGTCCTCTCTTCTTCCTCGGAGACCACTGACAAAGATCATGGAGATGGTGCTGCTGAGGATTCTTCTGCTGGCTTCAGACTCAACAAGGGCCAGTACTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCTACTCAGTTTTCTTGCCCTGTTTGCTGCAAAACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGACCTGAATCTCTGAGGGGTACCCAACCAACGGGCATGCTGAGGCTTCCTTGCTATTGCTGTGCTCCAGGGTGCAGAAACAACATTGATCACCCGAGATCAAAGCCTCTCAAAGACTTTAGAACACTTCAAACGCATTACAAAAGGAAGCATGGGATCAAACCTTTCATGTGCAGGAAATGCGGCAAGGCTTTTGCGGTGAGGGGAGATTGGAGAACTCATGAGAAGAACTGTGGCAAGCTCTGGTACTGCATCTGCGGCTCCGACTTCAAGCACAAGAGATCTCTTAAAGACCATATTAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGAATCGATGGTTTCGAAGAAGAAGATGAGCCAGCATCTGAAGTAGAACAAGATAATGATGATTCCACACAGTGA 1056 0.4801 MADPYSNFFSSSSFFRFNHHFPSSNPSPHAPYVHHNFINHSKTTDTTFFHYHHHHHHNHTSSTTATFSSFPPSPPLREELPLLRLSPAKQEEEDEDLSCTGPMDVEERMHIHPKEEEDDEDGTVTVALHIGLPSPSAAEMASVLSSSSETTDKDHGDGAAEDSSAGFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03002 351 MobiDBLite consensus disorder prediction 137 164 - -
Vimu6g03002 351 Gene3D Classic Zinc Finger 251 326 - -
Vimu6g03002 351 SMART c2h2final6 189 211 IPR013087 -
Vimu6g03002 351 SMART c2h2final6 273 293 IPR013087 -
Vimu6g03002 351 SUPERFAMILY beta-beta-alpha zinc fingers 254 293 IPR036236 -
Vimu6g03002 351 PANTHER ZINC FINGER PROTEIN WIP2 37 347 IPR043584 GO:0003700|GO:0010468
Vimu6g03002 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
Vimu6g03002 351 FunFam Zinc finger protein WIP2 242 324 - -
Vimu6g03002 351 Gene3D Classic Zinc Finger 188 211 - -
Vimu6g03002 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 273 293 IPR013087 -
Vimu6g03002 351 MobiDBLite consensus disorder prediction 58 77 - -
Vimu6g03002 351 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03002 Vimu-Chr6 26512269 26514577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03002 1 348 C2H2 Transcription Factor Family AT3G57670 61.082 4.94e-145 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu6g03002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03002 - - gmx:100802907 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03002 6 26512269 26514577 Vimu6g03002 6 26512269 26514577 ECH
Vimu6g03002 6 26512269 26514577 Vimu4g00453 4 3286304 3288174 ECH
Vimu6g03002 6 26512269 26514577 Vimu3g00372 3 3542631 3544827 PCT