Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03001 ATGGAGACAGAGAACGGGGACACCAAGTCCAGAAAGATGGAAGACTATGAAGTCATAGAGCAAATTGGAAGAGGGGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGCAGGGCAGATAACATAAAGAAAGCTCGAGGGTCATTTTTTCCTGAGGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTTGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCTGATATACCTTATGGTTATAAATCAGATATGTGGTCTCTTGGTAAGGTTCATGGATACCTTCTTCTAGTTGAGAAAATTGCTGGACATCAACCTGCATTTCGTGCTCCAGCGGCTGAATTGTTAAGGCATCCGCTTTTACAACCTTATGTTCTTCGTTGTCATAATGCATCCTCTAATATTCTTCCAGTATATCCCATAGTTAATTCGAAGGATAAAACAAGAAGATCTAGTAAATCTAGTGGTGGCAAGGACCATAAGGACAAAGAAGCAAGCTTAGTAAATCGTTTGGAACGGATTCATCCAATTGAGGGAAATGGAGATATACTCGTAAGCAATCTTCCAAATGATGCTGTTACCATCTCAACCAGTGCAGAAGACAATATTGAGACCAGGATGGTTGATCTTAACAGCTACATAGTGGAATCTTCTACTAGTATTAGCGGCTCAAAAGATGGGTCAACAACATCTGAATCAACCATTTGCAGTGTGTGCAAGGAGGACTTTAAAGGTAGACCTGCAAGGGAAACGAATAACAACGAAATCTGTTTAAAGAGTTCACAAGAATCACTGCATGAGGAACAGATATTTGCCGCCAAACATTTTCATAAATTAGAAGATGGCATTAATGCAGTGACCCCAGAAGTTGAAGACGGTTCTTGCAATGAAGGTTTGGACAATGCTGAAGCACCAAGGGAAGATTCGAGCCTTGACATCTCTGGTAAATCAACAATGTCCAGTGCAGGCAGTAGCAGCACTGATAAAGATAAGTCCATCATCAATGAGGAAAAGCCATCATTAACTGTGAATCCTATTACGGTCGAACATGATACAGAATCTGGAAACCACTTGAATGTATTTACAGAAGGCTCACATATGAACGGCTTGACATCTGATTGTAATGATGCACTTTTAGTTAAGGATGGTGACACAGCTAACAGACCCATTCTCTCCACGCATAAAGATGATAAAACGGTGGAGGGTGATCAGACAAGTGGCGTTTCATTGAGTGTAATAACAGAAGTCGTCGATGACGAGACAAATCTGTTGGATAGTCCCTGCCAACAAAGAGCTGATGCTCTGGAATCTCTGCTCGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTTGAAGAGCTTGCTGGGGTTCTGAGACCATTTGGAAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATTTCTGCCCAAAAATTTAATCCTCAGACCTAG 1632 0.4185 METENGDTKSRKMEDYEVIEQIGRGAFGSAFLVLHKSEKKSRADNIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGKVHGYLLLVEKIAGHQPAFRAPAAELLRHPLLQPYVLRCHNASSNILPVYPIVNSKDKTRRSSKSSGGKDHKDKEASLVNRLERIHPIEGNGDILVSNLPNDAVTISTSAEDNIETRMVDLNSYIVESSTSISGSKDGSTTSESTICSVCKEDFKGRPARETNNNEICLKSSQESLHEEQIFAAKHFHKLEDGINAVTPEVEDGSCNEGLDNAEAPREDSSLDISGKSTMSSAGSSSTDKDKSIINEEKPSLTVNPITVEHDTESGNHLNVFTEGSHMNGLTSDCNDALLVKDGDTANRPILSTHKDDKTVEGDQTSGVSLSVITEVVDDETNLLDSPCQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLAKSLISAQKFNPQT 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03001 543 SMART serkin_6 16 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03001 543 Pfam Protein kinase domain 50 154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03001 543 MobiDBLite consensus disorder prediction 365 383 - -
Vimu6g03001 543 MobiDBLite consensus disorder prediction 200 220 - -
Vimu6g03001 543 ProSiteProfiles Protein kinase domain profile. 1 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g03001 543 Gene3D Transferase(Phosphotransferase) domain 1 43 227 - -
Vimu6g03001 543 MobiDBLite consensus disorder prediction 342 396 - -
Vimu6g03001 543 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 13 38 - -
Vimu6g03001 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 78 90 IPR008271 GO:0004672|GO:0006468
Vimu6g03001 543 SUPERFAMILY Protein kinase-like (PK-like) 13 207 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03001 Vimu-Chr6 26459257 26464038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03001 32 143 MAP Kinase Kinase Kinase AT3G13530 42.478 3.74e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vimu6g03001 Pkinase 2.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03001 K08857 - gmx:100777214 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03001 6 26459257 26464038 Vimu6g03001 6 26459257 26464038 ECH
Vimu6g03001 6 26459257 26464038 Vimu3g00369 3 3502714 3510810 PCT