Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02999 ATGACGCAGAAGAAGAAAGCTAGGGTTTCTGACGACGAGGAAATGAAAGGGCAGGGAGATGAAACCAGCCTATACCAGGTTCTTGGTGTGGAGAGAACTGCTTCTCATCAGGAAATAAAGAAGGCTTACTACAAGTTGGCGTTGAGGCTTCATCCTGATAAGAACCCTGGTGATGAGGAAGCTAAAGAGAAATTCCAGCAACTGCAAAAGGTGATATCGATTCTTGGGGATGAAGAGAAGAGGGCACTATATGATCAGACTGGATGTGTTGACGATGATGACCTTGCTGGAGATGTTGTTCAGAATCTTCAAGAGTTCTTCAGAACAATGTACAAGAAGGTCACGGAAGCTGATATTGAGGAGTTCGAAACAAACTATAAGGGATCTGACTCGGAAAAAAATGATTTGATGGATTTGTACAAGAAGTGCAAGGGTAACATGAATAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAATTTGATTCACACCGATTCAAGGATATTCTCGATGAGGCTATAGCTGCTGGAGAATTAAAGGCAACAAAAGCCTACCAGAAATGGGCTAAGGCAGTATCTGAAACCAAACCGCCTCCAAATCCTTCGAGGAGGGAAAAGTCTAATAAGCAATCAGAAACAGATCTGTATGCAATGATAGCACAACGCCGAAATGAGAGGAAAGGCCAGTTTGATTCAATGTTCTCATCTCTAGTTTCAAAATATGGTGGAGGTGATATGCCGGAACCCTCTGAAGAGGAGTTTGAAGCTACACGGCGAAAGCTAGAGACTGGTAGATCCTCCAAAAAGTCAAAACAATCCAAGCGAAATTAA 831 0.4236 MTQKKKARVSDDEEMKGQGDETSLYQVLGVERTASHQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDDDLAGDVVQNLQEFFRTMYKKVTEADIEEFETNYKGSDSEKNDLMDLYKKCKGNMNRLFCSMLCSDPKFDSHRFKDILDEAIAAGELKATKAYQKWAKAVSETKPPPNPSRREKSNKQSETDLYAMIAQRRNERKGQFDSMFSSLVSKYGGGDMPEPSEEEFEATRRKLETGRSSKKSKQSKRN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02999 276 MobiDBLite consensus disorder prediction 1 20 - -
Vimu6g02999 276 PRINTS DnaJ domain signature 80 99 IPR001623 -
Vimu6g02999 276 PRINTS DnaJ domain signature 43 58 IPR001623 -
Vimu6g02999 276 PRINTS DnaJ domain signature 60 80 IPR001623 -
Vimu6g02999 276 PRINTS DnaJ domain signature 25 43 IPR001623 -
Vimu6g02999 276 Pfam DnaJ domain 24 85 IPR001623 -
Vimu6g02999 276 MobiDBLite consensus disorder prediction 1 19 - -
Vimu6g02999 276 CDD DnaJ 25 77 IPR001623 -
Vimu6g02999 276 MobiDBLite consensus disorder prediction 251 269 - -
Vimu6g02999 276 SMART dnaj_3 22 80 IPR001623 -
Vimu6g02999 276 Gene3D DnaJ domain 7 102 IPR036869 -
Vimu6g02999 276 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 12 272 IPR042977 -
Vimu6g02999 276 ProSiteProfiles dnaJ domain profile. 23 88 IPR001623 -
Vimu6g02999 276 MobiDBLite consensus disorder prediction 238 276 - -
Vimu6g02999 276 SUPERFAMILY Chaperone J-domain 21 95 IPR036869 -
Vimu6g02999 276 MobiDBLite consensus disorder prediction 190 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02999 Vimu-Chr6 26453233 26455408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02999 25 85 C2H2 Transcription Factor Family AT1G74250 39.394 4.64e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02999 K09529 - gmx:100793909 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02999 6 26453233 26455408 Vimu6g02999 6 26453233 26455408 ECH
Vimu6g02999 6 26453233 26455408 Vimu3g00367 3 3482740 3486019 PCT