Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02998 ATGGCCACTACTACATTCTGTACATACCTATTCATTCTCTCTGTGTCCCTTTCAATCTTCAATGTTTGTTCATCTTCATCAGAGAGGGACACCCTTCTCTCCTTCAAGACCTCCATAGAAGACTCTAAGAAAGCCTTGTCCAGTTGGTCCAACACTTCATCAAACCATTACTGTAACTGGACTGGAATAACCTGTTCCAACACACCTTTACTCTCTGTAATTTCTATCAACCTTCAGAGCTTAAACCTTTCTGGGGATATCTCATCTTCCATTTGTGACCTTCCAAATCTGTCTTATCTCAACCTTGCTGATAACATCTTCAACCAGGCCATCCCTCTTCACCTCTCTCAGTGTGGTTCCTTGGAGACTTTGAATCTCAGTACCAATCTCATATGGGGCACTATCCCATCTCAGATTTCTCAGTTTGCTTCCTTGAGAGTGCTTGATTTGGGAAGAAACCACATAGAAGGAAAAATCCCTGAGAGCTTAGGCTCCTTGAAGAACCTCCAAGTCCTCAACATGGGAAGCAACTTGCTTTCAGGTACTGTGCCTGCTGTCTTTGGCAATCTAACTAAACTTGAAGTTCTTGACTTGTCTCAGAATCCATACTTGGTGAGTGAGATTCCAGAGGATATCGGCGAGCTTGAAAATCTAAAGCAGCTTCTGTTGCAAAGCTCTTCTTTTCAAGGCAAAATTCCAGATTCTCTTGTGGGCCTGGTTAGTTTGACCCATTTAGATCTCTCTGAGAACAACCTAACAGGTGGGGTTCCTCAGGCTCTACCATCTTCTCTCAAGAACCTGGTTTCATTAGATGTTTCACAAAACAAGCTTTTGGGGCCATTTCCAAGTGGCATCTGCAAAGGAGAAGGCCTTATAAACCTCTGTCTCCACTCAAATTCCTTCAATGGTTCAATACCCAACTCCATTGATGAATGTAAGAGTCTTGAGAGATTCCAAGTCCAGAACAATGCCTTCTCTGGAGATTTCCCCGCTGCCTTGTGGTCATTACCCAAAATCAAGCTCATTAGAGTTGAAAACAACAGATTCTCAGGCCAAATACCCGAGTCAATTTCAGGAGCTGTTCAGTTGGAGCAAGTTCAGCTCGACAACAACAGCTTTGCTGGTAAAATTCCTCAAGGTCTTGGCCTTGTCAAGAGCTTATACAGATTTTCTGCTTCTCTTAACCGTTTCGATGGTGAACTTCCTCCTAACTTTTGTGACTCTCCTGTTATGAGCATAGTAAATCTCTCCCACAATTCTCTTTCTGGTCAAATACCAGCGCTAAAAAAATGCAGGAAACTAGTTTCACTGTCTTTGGCCGATAACAGTCTAACTGGAGAAATCCCCTCTTCTCTTGCCGAGCTACCTGTACTCACTTACCTTGATCTTTCAGATAACAATCTCACTGGTTCAATCCCACAAGGGCTTCAGAACTTGAAGCTTGCTCTTTTCAATGTCTCCTTCAATCAGTTATCAGGTAAAGTACCATACTCCTTGATTTCTGGTCTCCCTGCCTCGTTTTTGGACGGAAACCCTGGTCTTTGTGGCCCTGGATTGCCTAGCTCTTGTTCTGATGACATGCCAAGACGCCACATTGGTAGCATTACAACCTTAGTATGTGCTCTCATCAGTTTAGCCTTTGTTGCTGGAACTGCCATTGTTGTTGGTGGGTTTATTTTGTATAGGAGGTATTCCAAGGGGAATCAAGTGGGGGTCTGGCGCTCAGTGTTCTTCTATCCTCTCAGGATTACCGAGCATGATCTACTTGTAGGGATGAATGAGAAAAGCTCAATGGGAAATGGTGGGTTTTTTGGTAGAGTTTATGTTGTGAGTTTACCTAGTGGTGAACTAGTAGCTGTGAAGAAGTTAGTCAATTTTGGAAACCAGTCCTCCAAAAGTTTGAAAGCGGAGGTGAAGACTCTGGCAAAAATTAGGCACAAGAATGTTGTTAAAATTCTGGGGTTCTGCCACTCCGATGAGTCAGTGTTTGTCATTTATGAGTACTTGCATGGAGGGAGCTTAGGGGATTTGATTTCTCGTCAGAATTTTCAGCTGCAGTGGGTGGTTAGATTAAAAATTGCCATTGGAGTTGCTCAAGGGCTGGCATATCTTCACAAGGATTATGTCCCTCACTTGCTTCACAGAAATGTCAAGTCAAGTAACATTTTGTTGGATGCAAACTTCGAGCCAAAGCTCACAGATTTTGCCCTTGATCGAGTTGTGGGAGAAGCTTCATTTCAATCAATTTTGAACTCTGAAGCAGCATCTTCATGTTACATCGCACCAGAAAATGGTTACAGTAAGAAAGCAACTGAACAATTGGACATCTACAGCTTTGGCGTGGTACTACTGGAGCTAGTGAGTGGTAGGCAAGCAGAAGCAACGGAGTCAACTGACTCAGTTGACATTGTGAAGTGGGTTAGGAGGAAAGTGAACATCGCTAATGGGGTGCATCAAGTTCTTGACCCAAAAATATCAAACACTTTTCACCAAGAGATGATTGGAGCTTTAGATATTGCACTTCGTTGCACTTCTGTGGTGCCTGAGAAAAGGCCATCCATGGTAGAAGTTGTTAGAAGCCTTCAATCCCTGGAGTCAAGAAGTTGCATTGCAAATTTGCATGAAGCAAATGAGGAACCCTCACCAGTCTGA 2652 0.4329 MATTTFCTYLFILSVSLSIFNVCSSSSERDTLLSFKTSIEDSKKALSSWSNTSSNHYCNWTGITCSNTPLLSVISINLQSLNLSGDISSSICDLPNLSYLNLADNIFNQAIPLHLSQCGSLETLNLSTNLIWGTIPSQISQFASLRVLDLGRNHIEGKIPESLGSLKNLQVLNMGSNLLSGTVPAVFGNLTKLEVLDLSQNPYLVSEIPEDIGELENLKQLLLQSSSFQGKIPDSLVGLVSLTHLDLSENNLTGGVPQALPSSLKNLVSLDVSQNKLLGPFPSGICKGEGLINLCLHSNSFNGSIPNSIDECKSLERFQVQNNAFSGDFPAALWSLPKIKLIRVENNRFSGQIPESISGAVQLEQVQLDNNSFAGKIPQGLGLVKSLYRFSASLNRFDGELPPNFCDSPVMSIVNLSHNSLSGQIPALKKCRKLVSLSLADNSLTGEIPSSLAELPVLTYLDLSDNNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLDGNPGLCGPGLPSSCSDDMPRRHIGSITTLVCALISLAFVAGTAIVVGGFILYRRYSKGNQVGVWRSVFFYPLRITEHDLLVGMNEKSSMGNGGFFGRVYVVSLPSGELVAVKKLVNFGNQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESVFVIYEYLHGGSLGDLISRQNFQLQWVVRLKIAIGVAQGLAYLHKDYVPHLLHRNVKSSNILLDANFEPKLTDFALDRVVGEASFQSILNSEAASSCYIAPENGYSKKATEQLDIYSFGVVLLELVSGRQAEATESTDSVDIVKWVRRKVNIANGVHQVLDPKISNTFHQEMIGALDIALRCTSVVPEKRPSMVEVVRSLQSLESRSCIANLHEANEEPSPV 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02998 883 SUPERFAMILY Protein kinase-like (PK-like) 601 861 IPR011009 -
Vimu6g02998 883 Gene3D Transferase(Phosphotransferase) domain 1 669 879 - -
Vimu6g02998 883 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 669 869 - -
Vimu6g02998 883 FunFam - 587 668 - -
Vimu6g02998 883 Gene3D Ribonuclease Inhibitor 184 239 IPR032675 -
Vimu6g02998 883 SMART LRR_typ_2 94 118 IPR003591 -
Vimu6g02998 883 SMART LRR_typ_2 166 189 IPR003591 -
Vimu6g02998 883 SMART LRR_typ_2 190 215 IPR003591 -
Vimu6g02998 883 SMART LRR_typ_2 455 478 IPR003591 -
Vimu6g02998 883 SMART LRR_typ_2 264 288 IPR003591 -
Vimu6g02998 883 SMART LRR_typ_2 239 262 IPR003591 -
Vimu6g02998 883 SMART LRR_typ_2 142 165 IPR003591 -
Vimu6g02998 883 Gene3D Ribonuclease Inhibitor 259 526 IPR032675 -
Vimu6g02998 883 SUPERFAMILY L domain-like 25 302 - -
Vimu6g02998 883 SUPERFAMILY L domain-like 206 521 - -
Vimu6g02998 883 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
Vimu6g02998 883 Pfam Leucine rich repeat 217 277 IPR001611 GO:0005515
Vimu6g02998 883 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515
Vimu6g02998 883 Pfam Leucine rich repeat 144 202 IPR001611 GO:0005515
Vimu6g02998 883 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 863 - -
Vimu6g02998 883 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Vimu6g02998 883 FunFam Leucine-rich repeat family protein 27 184 - -
Vimu6g02998 883 PRINTS Leucine-rich repeat signature 242 255 - -
Vimu6g02998 883 PRINTS Leucine-rich repeat signature 264 277 - -
Vimu6g02998 883 Pfam Protein kinase domain 594 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02998 883 ProSiteProfiles Leucine-rich repeat profile. 457 480 IPR001611 GO:0005515
Vimu6g02998 883 Gene3D Phosphorylase Kinase; domain 1 586 668 - -
Vimu6g02998 883 ProSiteProfiles Protein kinase domain profile. 593 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02998 883 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 262 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02998 Vimu-Chr6 26440142 26442975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02998 28 864 Receptor kinase-like Gene Family AT5G06940 64.727 0.0 1072
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu6g02998 Pkinase 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02998 - - gmx:100794428 1564.28