Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02995 ATGGAAGAACCATACTCCATGCTCCAGAATTCAACAAGTACGGAACCAACCATGTTAGCCACTCAAGAAGGCACGCCCAGGAATTGGAATCAAGACGCAGTGCTACTCCATCAACACCTTGTCACTCCACAAATGGAAAGCACTTCTCAAGGCTCAATCAACAATTCCACCTGCAGTTCATCCCTTCAATACCATGTTTTATCCCTTTTAGACGGAATAATTAACGAAAAACACATAGAAGAAACCCTAATCCAATCCAAGCTATTGTCTTCCAATGTTGGGTCCATTGCTGCCACAGCAACAGCAACGTACATGCCACCTTCGCACGAGTCGTGTCTTGATTTGGTTGCTAAAACAATTGGTAGCAAGAGCTCTGTGTATCGAGGAGTAATCAAGTGCAACGATGACCGATTTGAAGCATTTGTGTGGGATAACAGCGATCCAGGGGAAAAAGGAAGAACAGGTGCTTATCCAAATGAAGTTGACGCCGCCAAAGCTCATGATTTGGTGTCAATCAGAATAGGGGGCTTAAAAGCATTAACCAATTTTCATGTGAGATGTTATTCCAAGGACATGGATGAAATGAGAAGAATGAGCAAATGGGACTATATTTGTGCTGTTAGAGGGTTGGGCAAGGGCTATACAGACGGTGATTCCCCTTTCCGTGGCGTCTACAGCAGAAAATGGGAAGCAAGGCTCGGTCGTGAGGGGTCACCAACCATACACTTGGGAACTTATTGTGAGTATATTGCAACTCATCAAATTCATGTTGATGCAGCGAGAGCTTATGACATTATATCAATAAAACTGAAGGGAGGGGAAGCAATTACCAACTTTGACTGGAATTCCTATGAAACTGAGGGCATAATGGAGAGTGTGATTGCTCAAGCAACGGACGGATCGATCATTCTGCAGAAAGAAGAAAAAAACAAAGAAACAGAAGCATCTCCTCAAAACAGCTCCTCAGTTCAATGCCATCCTCTACCACCCAGCATCCCATCCATTTGTCGTTGCTGCCACAACCAAATTCTCACACCAACCAACCCTCATGCTCTTGGTACCATTGCTGATACTGCTGGAAACAGTGCAAGCAACAATTCAATTGTTAACGATGCTGTACAGTTTCCAAACGAGAATGCAACACAGCAACAGCCACGGTCACTTCAGATTCCGAGCCAAGTGAGTTTCAACGATGGCTCTAATCAGAACCTTGTCAACAACAACAATAACAACAATGAGCTTCCAAATCATAATGCAGCACAGCAACAGTCACTTCAGACTCCGAGGCAAGTGAGTTTTAACAATGCCTTTAATCTGAATAACTACAACAACAACAACAACCAGTTTCTGCCTCAGGGTTCTAACCTTGCTTTGCCTGCTACTGGCATCCGAAGTTTAGAGTTAGAAAAGTGCGTCCGTTTCCCTGATTGGAGATCAGGTTTCGGAAAGAAGTTACTTGGGGGGAACTTGGAATTGGAACCTTTAAGCAAAGCTGCTGCCCTCAGTCTGCAAGCTCTACCACAAGTCACGCTGAATGGAAGTACAGGAGCAACACAGCTACACGCACCTGCATTGCAGCAAAGTTATGAGCATCAGAACTTAAACTCCTGCACCTCTGATAGTTTTCAGAATCCTGTTTCTGAACCAAACAACAACGGCTTCCAAAGTGAACTTGATTTGGACATGAGTGATTATCTCAACAGATCTTACATAGAAGACACTGATTTCACATGTGATTATGACATGTTTTCAGCCATGAATGGGGGTAGATAG 1773 0.4388 MEEPYSMLQNSTSTEPTMLATQEGTPRNWNQDAVLLHQHLVTPQMESTSQGSINNSTCSSSLQYHVLSLLDGIINEKHIEETLIQSKLLSSNVGSIAATATATYMPPSHESCLDLVAKTIGSKSSVYRGVIKCNDDRFEAFVWDNSDPGEKGRTGAYPNEVDAAKAHDLVSIRIGGLKALTNFHVRCYSKDMDEMRRMSKWDYICAVRGLGKGYTDGDSPFRGVYSRKWEARLGREGSPTIHLGTYCEYIATHQIHVDAARAYDIISIKLKGGEAITNFDWNSYETEGIMESVIAQATDGSIILQKEEKNKETEASPQNSSSVQCHPLPPSIPSICRCCHNQILTPTNPHALGTIADTAGNSASNNSIVNDAVQFPNENATQQQPRSLQIPSQVSFNDGSNQNLVNNNNNNNELPNHNAAQQQSLQTPRQVSFNNAFNLNNYNNNNNQFLPQGSNLALPATGIRSLELEKCVRFPDWRSGFGKKLLGGNLELEPLSKAAALSLQALPQVTLNGSTGATQLHAPALQQSYEHQNLNSCTSDSFQNPVSEPNNNGFQSELDLDMSDYLNRSYIEDTDFTCDYDMFSAMNGGR 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02995 590 ProSiteProfiles AP2/ERF domain profile. 126 184 IPR001471 GO:0003700|GO:0006355
Vimu6g02995 590 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 87 377 - -
Vimu6g02995 590 MobiDBLite consensus disorder prediction 392 426 - -
Vimu6g02995 590 SUPERFAMILY DNA-binding domain 125 185 IPR016177 GO:0003677
Vimu6g02995 590 ProSiteProfiles AP2/ERF domain profile. 220 280 IPR001471 GO:0003700|GO:0006355
Vimu6g02995 590 Gene3D AP2/ERF domain 220 281 IPR036955 GO:0003700|GO:0006355
Vimu6g02995 590 Gene3D AP2/ERF domain 126 186 IPR036955 GO:0003700|GO:0006355
Vimu6g02995 590 MobiDBLite consensus disorder prediction 1 23 - -
Vimu6g02995 590 SMART rav1_2 220 286 IPR001471 GO:0003700|GO:0006355
Vimu6g02995 590 SMART rav1_2 126 190 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02995 Vimu-Chr6 26419328 26422827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02995 94 313 AP2-EREBP Transcription Factor Family AT3G20840 34.764 7.57e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02995 - K09285 pvu:PHAVU_001G137500g 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02995 6 26419328 26422827 Vimu6g02995 6 26419328 26422827 ECH