Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02990 ATGGAGCAAGCTCCGGTAGGATTACGCGGATCCGTGCACGAAGGCGCTACGCTTGAGTCAATTCAATTCAACGAAGAAATTCAGGGAATCATGGCACCGGCACCGGCGCCGGAAAATGCAAGCTCATTTACTGCACTGCTTGAGCTTCCGCCGACCCAGGCGGTGGAGCTCCTTCACTCGCCCAACTCTGATGGAGCTCGGAAGCCACCTAATTGCCACGTCAAACCCTATTTGCTCAACTCTTTCGATGGCAATTTGACCTTTCCTTCCAACGCCGCTTTAATTGAACGCGCAGCCAAGTTCTCCGTGTTTGCTGGTGAAAACTCAACGTCGCCGGGGGAGGCATGTCTGCTTCGGGCCGGGTCTGGTTCGAATTTGGATAGGGTGAAGAACGAGCCGCAAGAGACTGATTCGAACCCGTGCTCCACGCAAGGGTGTGTTTCGGATCCTGTTGTTGAGAACAAGAACGAGAAGACGACCGTGAAGAGAAAGGAGCGAGAGAAGAAAGTAACGGTTAGAGGATCGTTGAAGAAGAGTAAGAGCGTCGCTGATGAGACCTCCGTTGACAGTGAGAAGCTTCCCTATGTCCACGTTCGAGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGGGTGTGATTTTTGAGTACTTTCTTGTGATATCAGGAACGGCAATGGTTCTAGATGAAATCATCAATCATGTGCAATCTCTACAGCGTCAAGTGGAGATTTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCCTTGACAGCTTATTGGCTACTGATTTGTATGAAAATCGGCATGATACTAAGTGGGACTCTGAAAGAGATGCTTGTGGACAGTTATTTAATCTGTTGGGCGTCATGCCGGAGCATCTAGGAAAGAGTATGAACATTGTGTTAGGGTAA 999 0.4925 MEQAPVGLRGSVHEGATLESIQFNEEIQGIMAPAPAPENASSFTALLELPPTQAVELLHSPNSDGARKPPNCHVKPYLLNSFDGNLTFPSNAALIERAAKFSVFAGENSTSPGEACLLRAGSGSNLDRVKNEPQETDSNPCSTQGCVSDPVVENKNEKTTVKRKEREKKVTVRGSLKKSKSVADETSVDSEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKGVIFEYFLVISGTAMVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDLYENRHDTKWDSERDACGQLFNLLGVMPEHLGKSMNIVLG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02990 332 MobiDBLite consensus disorder prediction 126 145 - -
Vimu6g02990 332 CDD bHLH_AtBPE_like 194 288 - -
Vimu6g02990 332 MobiDBLite consensus disorder prediction 164 185 - -
Vimu6g02990 332 Coils Coil 253 273 - -
Vimu6g02990 332 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 102 297 IPR024097 GO:0006355
Vimu6g02990 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 282 IPR036638 GO:0046983
Vimu6g02990 332 SMART finulus 210 269 IPR011598 GO:0046983
Vimu6g02990 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 263 IPR011598 GO:0046983
Vimu6g02990 332 Pfam Helix-loop-helix DNA-binding domain 208 232 IPR011598 GO:0046983
Vimu6g02990 332 Gene3D - 201 282 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02990 Vimu-Chr6 26374488 26382266 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02990 10 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 54.392 5.25e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu6g02990 HLH 9.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02990 - - vun:114168708 494.967