Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02987 ATGCATCGTCTTCTTTTATCACTCTTTCTCTTCTTCGTCGTTCCTCCAGCCGCCTCTCTCAACTCTGACGGCCTCTCCCTGCTTGCCCTGAAAGCCGCCGTGGACTCCGATCCAACCGGCGTCCTCAGCTCCTGGTCAGAAAACGACGCCTCTGCATGCCACTGGCCCGGCGTGTCCTGCACCGGCGACAGAGTTACGCAACTCTCTCTCCCTGACAAGAGCCTCAGCGGTTACATTCCCTCTGAACTGGGATTTCTCAGCTCCCTCAAAAGACTCAGTCTTCCATACAACAACTTCTCCAACGTCATTCCTCCCTCTCTCTTCAACGCCACCACCCTCATTGTCCTCGACCTCTCTCACAACTCGCTCTGTGGTTCCCTTCCCTCGCACTTTCTCTCCCTCAAGTTCCTTCGCCATTTGGACCTCTCCTCCAACTATCTCAACGGTTCCCTCCCTCCTACCCTCTCCGATCTCACTTCTCTTACCGGAACTCTCAATCTTTCTTTCAACTTCTTCTCCGGCGGGATTCCGGCCACTCTTGCTAACCTGCCTGTGGCTGTTAGCCTCGACCTCCGCAACAACAACCTCACCGGGAAAATCCCCCAGGTGGGATCCCTGCTTAACCAGGGTCCCACCGCGTTTTCTGGCAACCCTGGACTCTGTGGCTTCCCCTTGCAAACCGCGTGCCCCGAAGCGCAAAAGCCTGGGATTTTTGCCAACCCTGAAGAGGGTTTCCCTCAGAACCCCAATGCGCTCCACCCCGAAGGCTCAGACCAGAGAGTGAAACCACACGGTGGCGGTTCCGTCGCTGTTCTTGTCATATCCGGGCTTTCAGTCGCGGTTGGAGCGGTTTCTCTCTCTTTATGGGTTTTCCGGCGACGGTGGGGCGGTCGCGAGGAGGGGAAATTGGGGGGGCAGAAGTTGGAGGGTGAGGTGGATGTGGGCGAGGGGCAAGATGGTAAATTTGTTGTGGTGGACGAATGGTTTGAGTTGGAGTTGGAGGATTTGCTTAGGGCGTCTGCGTATGTTGTTGGGAAGAGTAGGAGTGGGATTGTGTACAAGGTGGTCGGGGTCGGAAGAGGGTCTTCCGCGGCGGCGAATGTGGTGGCCGTTCGGCGACTCAGTGAGGGTGATGCCACGTGGCGATTTAAGGAGTTTGAGTCTGAGGTGGAGGCCATTGCAAGGGTTCGTCACCCCAACGTGGTTCCTTTGAGAGCATATTATTATGCCCATGATGAGAAGCTGCTTATCACCGATTTCATTCGCAATGGAAGTTTGCACACTGCTTTACACGGTATCAATTCGTTGTCTTTCTTTTTCAAATTCATTCGGGGTGCTTTAATTATGCAATTAATGATCATATATGATGTTATTGTGGATGCCTTATTGTGGAAGTCACGTGTAATTTTGCAGCGTTTCTTGCTGTTCTTAAAATGGAACTAG 1443 0.5336 MHRLLLSLFLFFVVPPAASLNSDGLSLLALKAAVDSDPTGVLSSWSENDASACHWPGVSCTGDRVTQLSLPDKSLSGYIPSELGFLSSLKRLSLPYNNFSNVIPPSLFNATTLIVLDLSHNSLCGSLPSHFLSLKFLRHLDLSSNYLNGSLPPTLSDLTSLTGTLNLSFNFFSGGIPATLANLPVAVSLDLRNNNLTGKIPQVGSLLNQGPTAFSGNPGLCGFPLQTACPEAQKPGIFANPEEGFPQNPNALHPEGSDQRVKPHGGGSVAVLVISGLSVAVGAVSLSLWVFRRRWGGREEGKLGGQKLEGEVDVGEGQDGKFVVVDEWFELELEDLLRASAYVVGKSRSGIVYKVVGVGRGSSAAANVVAVRRLSEGDATWRFKEFESEVEAIARVRHPNVVPLRAYYYAHDEKLLITDFIRNGSLHTALHGINSLSFFFKFIRGALIMQLMIIYDVIVDALLWKSRVILQRFLLFLKWN 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02987 480 Gene3D Ribonuclease Inhibitor 25 134 IPR032675 -
Vimu6g02987 480 Pfam Protein tyrosine and serine/threonine kinase 344 432 IPR001245 GO:0004672|GO:0006468
Vimu6g02987 480 ProSiteProfiles Protein kinase domain profile. 338 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02987 480 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 432 IPR046959 -
Vimu6g02987 480 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Vimu6g02987 480 SUPERFAMILY L domain-like 22 226 - -
Vimu6g02987 480 SUPERFAMILY Protein kinase-like (PK-like) 343 436 IPR011009 -
Vimu6g02987 480 MobiDBLite consensus disorder prediction 241 260 - -
Vimu6g02987 480 Gene3D Ribonuclease Inhibitor 135 231 IPR032675 -
Vimu6g02987 480 FunFam Leucine-rich repeat receptor-like kinase 25 137 - -
Vimu6g02987 480 Gene3D Phosphorylase Kinase; domain 1 321 420 - -
Vimu6g02987 480 Pfam Leucine rich repeat 88 147 IPR001611 GO:0005515
Vimu6g02987 480 FunFam Leucine-rich repeat receptor-like protein kinase 138 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02987 Vimu-Chr6 26345666 26347108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02987 10 432 Receptor kinase-like Gene Family AT2G42290 58.837 3.03e-165 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu6g02987 PK_Tyr_Ser-Thr 1.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02987 - - gmx:100796011 669.848