Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02985 ATGAGTGGGCCTTCCAATTCATTGCCACCATTGTCATGGGCAGCAAGATTAAAAATTGCTCAAGAAGCAGCCAAGGGCTTGATGTACATACACGAGTTCAGTGGTCGCAAATATATCCATGGCAACATTAAGGCAACAAAAATCTTACTAGACGATGAGCTCCATGCATACGTGTCAGGTTTTGGACTTTCTCGGCTTGGTTTGGGCCCGCCAAAGTCTACTGCAATGCCTCCAAAACGGAACAGCTTGAACCAATCTTCTGTAACCACTGCAATGAGTTCAAAGGTTGCAGCTTCCTTTAACCACTACCTGGCACCTGAGGTGCGTATGGCCGGTGGGAAGTTCACTCAGAAATGTGATGTGTATTCATTTGGCATTGTGCTTTTGGAACTTTTGACGGGTAGGATGCCAGATTTTGGAGCAGAAAATGATGAGAAGGTGCTGGAGAGTTTTGTGAGGAAAGCGTTCAGGGAGGAGCAGCCACTGTCGGATATCATTGACCAAGCACTCATCCCTGAAGTTTATGCTAAAAAGCAAGTAATTGCTGCATTTCATATTGCTCTGAACTGCACCGAACTCGATCCAGAGTTGCGACCACGAATGAAAACCGTGTCAGAGAGCCTTGATCACATCAAATACAGTGAAAAACAAGAAAACCATGTATAG 666 0.452 MSGPSNSLPPLSWAARLKIAQEAAKGLMYIHEFSGRKYIHGNIKATKILLDDELHAYVSGFGLSRLGLGPPKSTAMPPKRNSLNQSSVTTAMSSKVAASFNHYLAPEVRMAGGKFTQKCDVYSFGIVLLELLTGRMPDFGAENDEKVLESFVRKAFREEQPLSDIIDQALIPEVYAKKQVIAAFHIALNCTELDPELRPRMKTVSESLDHIKYSEKQENHV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02985 221 SMART tyrkin_6 1 208 IPR020635 GO:0004713|GO:0006468
Vimu6g02985 221 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 9 212 - -
Vimu6g02985 221 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu6g02985 221 Gene3D Transferase(Phosphotransferase) domain 1 4 221 - -
Vimu6g02985 221 PIRSF ILK 8 220 - -
Vimu6g02985 221 SUPERFAMILY Protein kinase-like (PK-like) 10 213 IPR011009 -
Vimu6g02985 221 Pfam Protein tyrosine and serine/threonine kinase 10 208 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02985 Vimu-Chr6 26343838 26345560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02985 3 212 Receptor kinase-like Gene Family AT3G57830 56.338 2.04e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu6g02985 PK_Tyr_Ser-Thr 2.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02985 - - gmx:100796011 389.423